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Issues list

docs: document nextalign-like use-case docs Documentation related issues good first issue Good for newcomers help wanted Extra attention is needed
#1456 opened May 17, 2024 by ivan-aksamentov
When using ?input-fasta= url query param without specifying dataset, web auto-starts analysis (prematurely) package: nextclade_web t:bug Type: bug, error, something isn't working
#1436 opened Apr 17, 2024 by corneliusroemer
5
--input-pcr-primers listed in CLI help options despite being removed in v3 good first issue Good for newcomers help wanted Extra attention is needed t:bug Type: bug, error, something isn't working
#1432 opened Apr 4, 2024 by kapsakcj
2
Add a BA.1 reference for the web nextclade version t:feat Type: request of a new feature, functionality, enchancement
#1426 opened Feb 23, 2024 by murallcl
4
Allow suppression of |(reverse complement) suffix in header of alignment output t:feat Type: request of a new feature, functionality, enchancement
#1378 opened Jan 10, 2024 by corneliusroemer
2
web(minor): when customizing dataset files, it always says "pasted sequences" even if the field is for tree package: nextclade_web prio: low t:bug Type: bug, error, something isn't working
#1365 opened Dec 20, 2023 by corneliusroemer
2
web-based nextclade issue when using another reference t:ask Type: question, request of information 1
#1364 opened Dec 20, 2023 by yl315504
8
Web crash: The target <seqName> could not be identified in the dom package: nextclade_web prio: low t:bug Type: bug, error, something isn't working v3 To consider for v3
#1347 opened Dec 17, 2023 by corneliusroemer
2
Direct Auspice SVG Download package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1268 opened Oct 10, 2023 by corneliusroemer
Web: Grey scale coloring for region/country/divison if scale not predefined in reference tree t:talk Type: discussion of the application or the science behind it
#1265 opened Oct 3, 2023 by joverlee521
5
ENH(nextalign cli): show default values in --help usage statement t:feat Type: request of a new feature, functionality, enchancement
#1253 opened Sep 11, 2023 by AngieHinrichs
4
Include aligned sequences and translations in ndjson good first issue Good for newcomers help wanted Extra attention is needed needs triage Mark for review and label assignment t:feat Type: request of a new feature, functionality, enchancement
#1248 opened Sep 8, 2023 by chaoran-chen
Incorporation of enterovirus dataset into nextalde docker container t:feat Type: request of a new feature, functionality, enchancement
#1238 opened Aug 15, 2023 by laura-bankers
1
Mutations relative to different references t:feat Type: request of a new feature, functionality, enchancement
#1237 opened Aug 11, 2023 by rneher
1
Make Installation docs more prominent rather than GitHub releases? good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1167 opened Jun 8, 2023 by theosanderson
ENH: Show private aa substitutions in mutations tooltip package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1142 opened May 2, 2023 by corneliusroemer
1
Allow deletions and insertions in virus properties input files good first issue Good for newcomers help wanted Extra attention is needed needs triage Mark for review and label assignment t:feat Type: request of a new feature, functionality, enchancement
#1126 opened Mar 16, 2023 by ammaraziz
2
Minor visual bug: Unknown sequence range marker on last aa does not go all the way to end of gene view package: nextclade_web t:bug Type: bug, error, something isn't working
#1121 opened Mar 13, 2023 by corneliusroemer
Add AA insertion in nucleotide view tooltip: remove inconsistency package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1105 opened Feb 13, 2023 by corneliusroemer
4
Alternative Splicing t:feat Type: request of a new feature, functionality, enchancement
#1079 opened Dec 29, 2022 by fanninpm
1
Output dataset tag information in json results t:feat Type: request of a new feature, functionality, enchancement
#1078 opened Dec 21, 2022 by ammaraziz
4
Summary of errors in Nextclade t:bug Type: bug, error, something isn't working
#1045 opened Nov 2, 2022 by AnonymousUserUse
1
Frame shift ORF7a:empty range is confusing package: nextclade t:bug Type: bug, error, something isn't working
#1042 opened Oct 28, 2022 by corneliusroemer
3
Enable 'lite' version of QC analysis and mutations without a tree.json file needs triage Mark for review and label assignment t:feat Type: request of a new feature, functionality, enchancement
#1041 opened Oct 26, 2022 by sidneymbell
3
Web: indicate that a download has been initiated good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1023 opened Oct 15, 2022 by chaoran-chen
ProTip! Exclude everything labeled bug with -label:bug.