Enable 'lite' version of QC analysis and mutations without a tree.json
file
#1041
Labels
needs triage
Mark for review and label assignment
t:feat
Type: request of a new feature, functionality, enchancement
For many pathogens, it would be super useful to be able to do at least a 'lite' version of QC analysis and mutation calling with just the reference sequence / i.e., without requiring a
tree.json
file.Context being that this would cut the time required to prep a new pathogen-specific reference dataset by probably 75%+ (making the tree also implies having to gather and clean a representative dataset, infer and iterate on
clade_membership
assignments, advanced understanding of how to use augur, etc.)The text was updated successfully, but these errors were encountered: