fix: properly update dependencies lockfile v2

[natiz]

npm lockfile v2 includes dependencies and devDependencies,
this commit updates those based on the updated package.

Description

Follow up of PR #3091, also update lockfile v2 packages."".dependencies and packages."".devDependencies keys.

Motivation and Context

Solves an issue with npm lockfile v2, where dependencies/devDependencies are not properly updated.

How Has This Been Tested?

Tested locally

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to change)
• Chore (change that has absolutely no effect on users)

Checklist:

• My code follows the code style of this project.
• My change requires a change to the documentation.
• I have updated the documentation accordingly.
• I have read the CONTRIBUTING document.
• I have added tests to cover my changes.
• All new and existing tests passed.

[natiz]

@JamesHenry can you PTAL?

[fahslaj]

Thank you @natiz !