Discussions

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  Adding new population in the unified genealogy

  nbesteban asked Apr 30, 2024 in Q&A · Unanswered

  

  

  

  

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  Understanding nodes with multiple parents

  madeline-chase asked May 2, 2024 in Q&A · Unanswered

  

  

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  Creating polytomies by removing edges

  hyanwong started Apr 14, 2024 in Show and tell

  

  

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  Calculating number of extant lineages over time

  JaneeshBansal asked Nov 27, 2023 in Q&A · Answered

  

  

  

  

  9
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  Collapse some coalescence into polytomies

  hyanwong asked Jan 13, 2024 in Q&A · Closed · Unanswered

  

  

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  Tree Sequences with Indels

  reedacartwright asked Oct 9, 2021 in Q&A · Answered

  

  

  

  

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  Extracting branch lengths from mutations

  Schraiber asked Jan 26, 2024 in Q&A · Unanswered

  

  

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  Efficient graph APIs

  jeromekelleher started Nov 10, 2023 in Ideas

  

  

  

  

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  Understanding trait_linear_model

  quattro asked Jan 18, 2024 in Q&A · Answered

  

  

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  Remove flanking locally-unary regions

  hyanwong asked Jan 13, 2024 in Q&A · Unanswered

  

  

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  Finding tree index from list of positions

  hyanwong started Mar 6, 2023 in Show and tell

  

  

  

  

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  Tree-based representation of quantitative traits

  hanbin973 started Dec 30, 2023 in Ideas

  

  

  

  

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  all nodes_time() - even duplicates

  JaneeshBansal asked Dec 11, 2023 in Q&A · Unanswered

  

  

  

  

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  How to check if a tree sequence has any locally unary nodes

  hyanwong started Oct 28, 2023 in Show and tell

  

  

  

  

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  Why Tree sequences generated from Relate (convert .mut/.anc) has no population labels

  itsmestewart asked Oct 18, 2023 in Q&A · Closed · Answered

  

  

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  Genealogical relatedness instead of genetic relatedness

  fouerghi asked Aug 15, 2023 in Q&A · Closed · Unanswered

  

  

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  How to find out if there is any metadata in a table

  hyanwong asked Jul 22, 2023 in Q&A · Answered

  

  

  

  

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  PCA from the genealogical PoV, and LD pruning

  hyanwong started Jul 5, 2023 in General

  

  

  

  

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  Question about how to use tsk_treeseq_genealogical_nearest_neighbours function of C API

  T-Funayama asked Jul 8, 2023 in Q&A · Unanswered

  

  

  

  

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  Abstracting incremental algorithms and supporting numba

  jeromekelleher started Jul 6, 2023 in Ideas

  

  

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  Find nodes which are coalescent anywhere

  hyanwong asked Jul 5, 2023 in Q&A · Answered

  

  

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  Finding nodes with multiple parents

  hyanwong started Jun 20, 2023 in Show and tell

  

  

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  Ways to visualize diploid tree sequences that aren't sequences of trees

  enhancement New feature or request Python API Issue is about the Python API Visualisation This issue addresses visualisation

  petrelharp started Feb 19, 2020 in Ideas

  

  

  

  

  43
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  Get the edge ids for every mutation in a TS

  hyanwong asked Apr 10, 2021 in Q&A · Answered

  

  

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  Radical suggestion for python API: integers versus objects

  hyanwong started May 16, 2023 in Ideas

  

  

  

  

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