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@teamtomo

teamtomo

teamtomo

Welcome to the TeamTomo GitHub organization.

modular Python packages the cryo-ET community can depend on

Mission

To help the cryo-ET community develop their ideas without reinventing the software stack.

Key ideas

  • packages are small, modular and easy to install
  • package scope is limited and well defined
  • APIs are Pythonic and type hinted
  • code is tested

If this seems daunting, we're here to help, please reach out by posting on image.sc)!

Development model

Because packages in teamtomo are small and well scoped it is easy to depend on only those packages relevant to your work.

teamtomo is not a place for the development of your own software projects. Your projects belong to you and the credit should be yours alone! Did you develop a small, reusable component along the way that could benefit the entire community? We would love to work with you to bring it here.

Work with us

Interested in working with us in some way? Fantastic, Welcome aboard!

Most discussion should happen on image.sc so it is easy to find when searching online.

For realtime chat we use image.sc's zulip, a chat platform open to all for discussing details about the project.

Licensing

All projects in this organisation should be licensed under the 3-Clause BSD License.

Using and Citing the Tools

Pinned

  1. starfile starfile Public

    STAR file I/O in Python

    Python 41 16

  2. fidder fidder Public

    Detect and erase gold fiducials in cryo-EM images

    Python 8 3

  3. mmdf mmdf Public

    macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames

    Python 8 1

  4. imodmodel imodmodel Public

    IMOD model files as pandas dataframes in Python

    Python 8 6

  5. lil-aretomo lil-aretomo Public

    A lightweight Python API for AreTomo

    Python 7 3

  6. mdocfile mdocfile Public

    SerialEM mdoc files as pandas dataframes

    Roff 8 6

Repositories

Showing 10 of 20 repositories

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