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alisterburt/README.md
πŸ™ƒ Alister Burt                                                                                     
┣━━ πŸ”¬ Research Interests                                                                           
┃   ┣━━ cryo-electron tomography - enabling in situ protein structure determination                 
┃   ┗━━ bacterial chemotaxis - how bacteria sense and respond to nutrients/toxins                   
┣━━ πŸ“¦ Open Source Packages                                                                         
┃   ┣━━ napari - n-dimensional data visualisation in Python                                         
┃   ┣━━ blik - browse cryo-ET data and annotations in napari                                        
┃   ┣━━ napari-animation - make animations in napari                                                
┃   ┣━━ dynamo2m - combine dynamo and warp/relion/m                                                 
┃   ┣━━ eulerangles - fast conversion of large sets of Euler angles                                 
┃   ┗━━ starfile - STAR file IO in Python                                                           
┣━━ ⭐ Web Projects                                                                              
┃   ┗━━ teamtomo.org   - cryo-ET knowledge platform                                                 
┣━━ πŸŽ™οΈ Teaching                                                                                      
┃   ┣━━ EMBO image processing for cryo electron microscopy                                          
┃   ┣━━ EMBO advanced methods in bioimage analysis                                                  
┃   ┣━━ EMBO cryo-electron microscopy and 3D image processing                                       
┃   ┣━━ Dynamo workshop - Basel, CH                                                                 
┃   ┣━━ Intro to bioinformatics - UniversitΓ© Grenoble Alpes                                         
┃   ┗━━ Multidisciplinary experimental methods - UniversitΓ© Grenoble Alpes                          
┗━━ πŸ‘¨β€πŸ’» Employer                                                                                   
    ┣━━ MRC-LMB - Postdoc in David Barford's group                                                  
    ┗━━ ⏰ Previously...                                                                            
        ┣━━ CCP-EM - collaborative computational project for electron microscopy                    
        ┗━━ Institut de Biologie Structurale - PhD student in Irina Gutsche's group
        ┣━━ Diamond Light Source - Intern on B24                                                    
        ┗━━ CHyM - Intern                           

Follow me on twitter @AlisterBurt

Pinned

  1. napari/napari-animation napari/napari-animation Public

    A napari plugin for making animations

    Python 71 28

  2. napari/napari napari/napari Public

    napari: a fast, interactive, multi-dimensional image viewer for python

    Python 2.1k 409

  3. napari-subboxer napari-subboxer Public

    Python 3 1

  4. teamtomo/starfile teamtomo/starfile Public

    STAR file I/O in Python

    Python 41 16

  5. napari-mrcfile-reader napari-mrcfile-reader Public

    Read MRC format image files into napari using the mrcfile package from CCP-EM

    Python 16 4

  6. teamtomo/fidder teamtomo/fidder Public

    Detect and erase gold fiducials in cryo-EM images

    Python 8 3