0.0.8

What's Changed

📘 Enhancements in Documentation

• [DOCS] Example walkthrough: Step 0 does not affect the end result by @asmacdo in #159
• [DOCS] minor changes in eg walkthrough: explain when Step 0 is optional by @zhao-cy in #164
• [DOCS] update contact email and add BABS paper by @zhao-cy in #162

New Contributors

• @asmacdo made their first contribution in #159

Full Changelog: 0.0.7...0.0.8

0.0.7

What's Changed

🐛 Bug Fixes

• [FIX] Fix validator for unzipped input datasets: considering folders not in patterns of sub-* by @zhao-cy in #143

📘 Enhancements in Documentation

• [DOCS] update docs during paper revision by @zhao-cy in #146
• [DOCS] achieve checks in NMIND docs domain at silver level by @zhao-cy in #148

Other changes

• Add issue templates by @tsalo in #130

New Contributors

• @tsalo made their first contribution in #130

Full Changelog: 0.0.6...0.0.7

0.0.6

What's Changed

🐛 Bug Fixes

• [FIX] add a function for deciding the command for job cancellation based on cluster system by @zhao-cy in #134

📘 Enhancements in Documentation

• [DOCS] add DOI link to zenodo archive by @zhao-cy in #125
• [DOCS] minor changes in example walkthrough and docs for jobs by @zhao-cy in #131
• [DOCS] add guide on how to test BABS by @zhao-cy in #129
• [DOCS] clean example YAML files by @zhao-cy in #132
• [DOCS] minor fix in docs by @zhao-cy in #135

Full Changelog: 0.0.5...0.0.6

0.0.5

What's Changed

🎉 Exciting New Features

• [ENH] refactoring of babs_submit function and updator of job status table by @djarecka in #99
• [DOCS/ENH] Documentation enhancement and review by @zhao-cy in #103
  • This also includes enhancements in CLI and printed messages of BABS functions.
• [ENH] Add an option of creating a wrapper output folder of all derivatives by @zhao-cy in #116
  • Now, BABS is compatible with latest version of fMRIPrep.

📘 Enhancements in Documentation

• [DOCS] prepare example walkthrough by @zhao-cy in #81
• [DOCS] add instructions on how to add partitions for slurm in example walkthrough by @zhao-cy in #108
• [DOCS] Revisions in docs after testing on MIT slurm cluster by @djarecka in #109
• [DOCS] Update walkthrough.rst by @yibeichan in #119
• [DOCS] add guides in eg walkthrough: if there is no internet on compute nodes by @zhao-cy in #121

New Contributors

• @yibeichan made their first contribution in #119

Full Changelog: 0.0.4...0.0.5

0.0.4

We're excited to release the first version of BABS that works on Slurm clusters! 🎉

What's Changed

🎉 Exciting New Features

• [ENH] adding slurm as a system type by @djarecka in #92
• [ENH] test out BABS's Slurm version by @zhao-cy in #96
• [FIX/ENH] Fix directives and job accounting; enhance example container config YAML filenames by @zhao-cy in #98
  • The docs about Slurm directives are also added in this PR

New Contributors

• @djarecka made their first contribution in #92

Full Changelog: 0.0.3...0.0.4

0.0.3

What's Changed

🛠 Breaking Changes

• [ENH] singularity run: handle FreeSurfer license and Templateflow home by @zhao-cy in #83
• [ENH] Improve section names in container config YAML file by @zhao-cy in #88

📘 Documentation and examples updates

• [ENH] update toy BIDS App version used for CircleCI testing by @zhao-cy in #90

Full Changelog: 0.0.2...0.0.3

0.0.2: First release of BABS: for SGE clusters

We are excited to announce the first release of BABS! 🎉

It currently works on SGE clusters. This includes functions of babs-init, babs-check-setup, babs-submit, babs-status, and babs-merge. For how to use these functions, please refer to BABS's readthedocs.

BABS is also available on PyPI now. You can install it by running the command below:

pip install babs