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44 Open 65 Closed
44 Open 65 Closed
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Issues list

[ENH] Add workflow for processing and adding new subjects to BABS results enhancement New feature or request
#171 opened Mar 5, 2024 by mattcieslak
Make e2e testing run on PRs as well as e.g. weekly enhancement New feature or request
#170 opened Mar 5, 2024 by yarikoptic
Add user-configurable environment variable passthrough enhancement New feature or request
#167 opened Jan 8, 2024 by asmacdo
All templated bash scripts should be "robust" and shellcheck-clean bug Issues noting problems and PRs fixing those problems.
#166 opened Jan 4, 2024 by yarikoptic
[DOCS] update paper citation
#163 opened Dec 14, 2023 by zhao-cy
@mattcieslak
Make parsing of output more robust
#160 opened Dec 8, 2023 by yarikoptic
[FIX] git commit --amenderror when babs-init: need to add --allow-empty?
#156 opened Nov 15, 2023 by zhao-cy
1
2
[DOCS] docs enhancements from Austin documentation Improvements or additions to documentation
#154 opened Nov 3, 2023 by zhao-cy
2
[DOCS] update example walkthrough: to use $TMP" for CUBIC cluster
#153 opened Nov 1, 2023 by zhao-cy
Change permissions on NFS4 ACL filesystems in order to remove git annex files
#141 opened Sep 28, 2023 by Michael-Sun
1
FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. enhancement New feature or request
#140 opened Sep 27, 2023 by Michael-Sun
4
UnicodeEncodeError: 'latin-1' codec can't encode character '\u2713' in position 0: ordinal not in range(256) documentation Improvements or additions to documentation
#139 opened Sep 27, 2023 by Michael-Sun
@zhao-cy
1
[FIX] path generated by BABS is too long for freesurfer to function/run properly documentation Improvements or additions to documentation enhancement New feature or request
#138 opened Aug 24, 2023 by yibeichan
15
[DOCS] (NMIND gold) Continuous integration badges in README for coverage
#127 opened Jul 25, 2023 by zhao-cy
1
1
Test out: XCP-D when FreeSurfer derivatives are needed (i.e., –cifti and --warp-surfaces-native2std)
#123 opened Jul 24, 2023 by zhao-cy
installation error on Hanke group local cluster
#122 opened Jul 24, 2023 by zhao-cy
[DOCS] minor enhancements in docs after Sydney's review documentation Improvements or additions to documentation
#115 opened Jul 12, 2023 by zhao-cy
1 of 5 tasks
manuscript ready
[tests] infrastructure for automatic pytest of babs-submit and babs-status
#113 opened Jul 10, 2023 by zhao-cy Enhancements and features on the roadmap
[ENH] incorporating configs from --call-fmt when babs-init roadmap
#112 opened Jul 10, 2023 by zhao-cy Enhancements and features on the roadmap
[DOCS] NMIND checklist: on roadmap roadmap
#111 opened Jul 7, 2023 by zhao-cy
1 of 6 tasks
Enhancements and features on the roadmap
[DOCS] NMIND checklist - targets that are easy to achieve
#110 opened Jul 7, 2023 by zhao-cy
7 of 12 tasks
Enhancements and features on the roadmap
[docs] Review updated example walkthrough
#107 opened Jun 21, 2023 by zhao-cy
8 tasks
[ENH] make sure no bug caused by soft_memory_limit on Slurm cluster
#106 opened Jun 12, 2023 by zhao-cy manuscript ready
1
[ENH] improve printed messages from BABS functions
#101 opened May 26, 2023 by zhao-cy
2 tasks
[ENH] incorporate job status Rr, a subtype of running state roadmap
#100 opened May 26, 2023 by zhao-cy
ProTip! Exclude everything labeled bug with -label:bug.