Update nbclient #1234
Update nbclient #1234
Conversation
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Benchmark reportThe execution time (in milliseconds) are grouped by test file, test type and browser. Results table
❗ Test metadata have changed--- /dev/fd/63 2022-10-25 10:04:56.927950940 +0000
+++ /dev/fd/62 2022-10-25 10:04:56.927950940 +0000
@@ -4,37 +4,37 @@
"BENCHMARK_REFERENCE": "actual"
},
"browsers": {
- "chromium": "97.0.4666.0"
+ "chromium": "94.0.4595.0"
},
"systemInformation": {
"cpu": {
- "brand": "Xeon® Platinum 8272CL",
+ "brand": "Xeon® E5-2673 v3",
"cache": {
"l1d": 65536,
"l1i": 65536,
- "l2": 2097152,
- "l3": 36700160
+ "l2": 524288,
+ "l3": 31457280
},
"cores": 2,
"family": "6",
- "flags": "fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear",
+ "flags": "fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt md_clear",
"governor": "",
"manufacturer": "Intel®",
- "model": "85",
+ "model": "63",
"physicalCores": 2,
"processors": 1,
"revision": "",
"socket": "",
- "speed": 2.6,
+ "speed": 2.4,
"speedMax": null,
"speedMin": null,
- "stepping": "7",
+ "stepping": "2",
"vendor": "GenuineIntel",
"virtualization": false,
"voltage": ""
},
"mem": {
- "total": 7281311744
+ "total": 7291699200
},
"osInfo": {
"arch": "x64",
@@ -42,11 +42,11 @@
"codename": "Focal Fossa",
"codepage": "UTF-8",
"distro": "Ubuntu",
- "kernel": "5.15.0-1022-azure",
+ "kernel": "5.8.0-1040-azure",
"logofile": "ubuntu",
"platform": "linux",
- "release": "20.04.5 LTS",
- "serial": "cb2c9040582e4276b4bc683d9e14354c",
+ "release": "20.04.3 LTS",
+ "serial": "cfc067bfcb844f35865e279a1b0e66c5",
"servicepack": "",
"uefi": false
} |
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Nice thanks! |
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ah the CI checks are still running, maybe there is some real issue underneath (timeout). |
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Cancelling and restarting the checks. |
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Doing one more full CI kick. |
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cc @davidbrochart who might know if something needs to be updated to handle the latest |
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So, I tried 0.4.0rc0 on the openSUSE Build Service with the same change as here and first thought I could not reproduce the hang form GitHub Actions, But then noticed that the pytest started to hang before the first test as soon as I had updated jupyter-client from 7.3.4 to 7.4.2. I suspect a non-returning test fixture. |
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Pinning jupyter-client got rid of the hangs: https://github.com/bnavigator/voila/actions/runs/3268022596 That's not a viable solution but might lead us into the right direction. Ping @blink1073 |
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Note there is a significant refactor in the the forthcoming |
https://build.opensuse.org/request/show/1029570 by user bnavigator + dimstar_suse - Bump to nbclient 0.7 (See also gh#voila-dashboards/voila#1234) - Remove import from vendorized mistune in nbconvert: not vendorized anymore
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Thanks @bnavigator for the pointer, indeed the changes of The diff between the two version is very short (https://github.com/jupyter/jupyter_client/pull/852/files) but i can not find any clue from the diff. Ping @davidbrochart who might understand what happened here. |
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I don't know, I see that @blink1073 backported a fix from the PR that removes nest-asyncio, that might have consequences. |
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Based on the diff, I would suspect the handling of asyncio sockets in |
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For the record, an update to jupyter_client 7.4.3 does not change anything here: |
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So skipping test_execute_output lets the rest of the test suite pass. I stepped through the test and it hangs somewhere here: abuild@skylab:~/rpmbuild/BUILD/voila-0.4.0rc0> pytest --trace tests/execute_output_test.py
===================================================== test session starts =====================================================
platform linux -- Python 3.10.7, pytest-7.1.2, pluggy-1.0.0
rootdir: /home/abuild/rpmbuild/BUILD/voila-0.4.0rc0
plugins: anyio-3.5.0, rerunfailures-10.2, tornasync-0.6.0.post2
collected 1 item
tests/execute_output_test.py
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> PDB runcall (IO-capturing turned off) >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
> /home/abuild/rpmbuild/BUILD/voila-0.4.0rc0/tests/execute_output_test.py(39)test_execute_output()
-> path = os.path.join(BASE_DIR, 'notebooks/output.ipynb')
(Pdb) n
> /home/abuild/rpmbuild/BUILD/voila-0.4.0rc0/tests/execute_output_test.py(40)test_execute_output()
-> nb = read(path, NO_CONVERT)
(Pdb) n
> /home/abuild/rpmbuild/BUILD/voila-0.4.0rc0/tests/execute_output_test.py(41)test_execute_output()
-> nb_voila = deepcopy(nb)
(Pdb) n
> /home/abuild/rpmbuild/BUILD/voila-0.4.0rc0/tests/execute_output_test.py(42)test_execute_output()
-> executenb(nb_voila)
(Pdb) s
--Call--
> /usr/lib/python3.10/site-packages/voila/execute.py(130)executenb()
-> def executenb(nb, cwd=None, km=None, **kwargs):
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(131)executenb()
-> resources = {}
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(132)executenb()
-> if cwd is not None:
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(135)executenb()
-> nb, resources = ClearOutputPreprocessor().preprocess(nb, resources)
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(136)executenb()
-> executor = VoilaExecutor(nb, km=km, **kwargs)
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(137)executenb()
-> return executor.execute(nb, resources, km=km)
(Pdb) s
--Call--
> /usr/lib/python3.10/site-packages/voila/execute.py(54)execute()
-> def execute(self, nb, resources, km=None):
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(55)execute()
-> try:
(Pdb) n
> /usr/lib/python3.10/site-packages/voila/execute.py(56)execute()
-> result = super(VoilaExecutor, self).execute()
(Pdb) s
--Call--
> /usr/lib/python3.10/site-packages/nbclient/util.py(84)wrapped()
-> def wrapped(*args, **kwargs):
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(85)wrapped()
-> return just_run(coro(*args, **kwargs))
(Pdb) s
--Call--
> /usr/lib/python3.10/site-packages/nbclient/util.py(40)just_run()
-> def just_run(coro: Awaitable) -> Any:
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(42)just_run()
-> try:
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(43)just_run()
-> loop = asyncio.get_running_loop()
(Pdb) n
RuntimeError: no running event loop
> /usr/lib/python3.10/site-packages/nbclient/util.py(43)just_run()
-> loop = asyncio.get_running_loop()
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(44)just_run()
-> except RuntimeError:
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(45)just_run()
-> loop = None
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(46)just_run()
-> if loop is None:
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(47)just_run()
-> had_running_loop = False
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(48)just_run()
-> loop = asyncio.new_event_loop()
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(49)just_run()
-> asyncio.set_event_loop(loop)
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(52)just_run()
-> if had_running_loop:
(Pdb) n
> /usr/lib/python3.10/site-packages/nbclient/util.py(60)just_run()
-> return loop.run_until_complete(coro)
(Pdb) n
### hang ###Maybe related to jupyter/nbclient#249, @davidbrochart ? |
martinRenou
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Thanks a lot everyone for investigating! It looks like |
Does any of the |
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7.4.3 does not. Checking 7.4.4 now.. Update: No. |
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Still an issue with jupyter_client 7.4.8 |
cc. @bnavigator