GitHub - uweschmitt/pyOpenMS: Python bindings for Open-MS framework

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 120 Commits
addons		addons
converters		converters
pxds		pxds
pyTOPP		pyTOPP
pyopenms		pyopenms
tests		tests
.gitignore		.gitignore
CMakeLists.txt		CMakeLists.txt
FOR_DEVELOPERS		FOR_DEVELOPERS
INTERNALS		INTERNALS
License.txt		License.txt
README		README
check_test_coverage.py		check_test_coverage.py
distribute_setup.py		distribute_setup.py
env.py		env.py
run_memleak_tests_and_unittests.sh		run_memleak_tests_and_unittests.sh
run_nose.py		run_nose.py
run_pipeline.sh		run_pipeline.sh
run_unittests.sh		run_unittests.sh
run_valgrind.sh		run_valgrind.sh
setup.py		setup.py
valgrind-python.supp		valgrind-python.supp
version.py		version.py

Repository files navigation

Python Bindings for open-MS

1) run "python check_system.py" 

2) install missing packages

3) modify paths in setup.py

4) building: run "python setup.py build_ext --inplace"

5) for testing:
     - you need nosetests test framework
     - run ".\run_unittests_with_installed_pyopenms.bat"

6) for system wide install: run "python setup.py install"

7) installation to a different target:
   "python setup.py install --help" helps

build zip incl. own installer:

  python setup.py bdist

  python build_zip_for_install.py

  -> dist\setup_pyOpenMS-*zip