Merge pull request #1566 from unipept/feature/deploy-script

Add post-build script that automatically configures umgap files

package.json

@@ -3,7 +3,7 @@
   "version": "5.1.2",
   "scripts": {
     "dev": "vite",
-    "build": "vue-tsc --noEmit && vite build",
+    "build": "vue-tsc --noEmit && vite build && ./post-build.sh",
     "preview": "vite preview",
     "lint": "eslint . --fix --ignore-path .gitignore"
   },

post-build.sh

@@ -0,0 +1,13 @@
+# This script should be executed after the application has been compiled and built. This script is automatically
+# executed as part of the "build"-command of npm (as defined in the package.json file).
+
+# First step, create links to the files that are required by the UMGAP pipeline in the correct location.
+UMGAP_VERSION="2024-03-07"
+mkdir dist/system
+mkdir dist/system/umgap
+mkdir dist/system/umgap/${UMGAP_VERSION}
+
+printf "${UMGAP_VERSION}\n" > latest
+ln -s "/mnt/datapept/${UMGAP_VERSION}/taxons.tsv" "dist/system/umgap/${UMGAP_VERSION}/taxons.tsv"
+ln -s "/mnt/datapept/${UMGAP_VERSION}/tryptic.fst" "dist/system/umgap/${UMGAP_VERSION}/tryptic.fst"
+ln -s "/mnt/datapept/${UMGAP_VERSION}/ninemer.fst" "dist/system/umgap/${UMGAP_VERSION}/ninemer.fst"