Identification of differential RNA modifications from nanopore direct RNA sequencing
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Updated
Apr 29, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
RNA modifications detection from Nanopore dRNA-Seq data
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Convert mpileup format to base count tsv table
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
handful of tools that might be needed before or after HAMR
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
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