Discussions

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  Export the neighbor graph from integrated Seurat objective and import to scvelo

  Alvis-Jiang asked May 25, 2024 in Q&A · Unanswered

  

  

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  Using precomputed PCA and UMAP coordinates

  TarekGharsalli started Oct 5, 2021 in General

  

  

  

  

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  The result is contrary to the expectation, is there a better suggestion?

  bug Something isn't working

  Jingle0814 asked Nov 6, 2023 in Q&A · Unanswered

  

  

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  velocity values for genes

  michaelmonsonego started Apr 18, 2024 in General

  

  

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  interpreting rna velocity- discrepancy between models

  yamihn started Sep 26, 2023 in General

  

  

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  Scvelo split conditions

  feanaros started Apr 9, 2024 in General

  

  

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  Unsure about phase portraits

  nicodemus88 asked Jun 18, 2021 in Q&A · Unanswered

  

  

  

  

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  How to run scvelo on cellbender background-removed results?

  sooheelee asked Apr 10, 2023 in Q&A · Unanswered

  

  

  

  

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  harmony

  Flu09 asked Feb 24, 2024 in Q&A · Unanswered

  

  

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  RNA velocity results change between scvelo versions 0.2.4 and 0.3.1

  NorationJ asked Feb 21, 2024 in Q&A · Unanswered

  

  

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  scVelo "default" embedding?

  Laura19993 asked Feb 21, 2024 in Q&A · Unanswered

  

  

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  Comparing latent time

  kylagelev asked Feb 15, 2024 in Q&A · Unanswered

  

  

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  Question about logarithmization in scvelo.pp.filter_and_normalize

  enhancement

  elifdogandar asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  A question about how use scvelo

  enhancement

  Flu09 asked Jan 29, 2024 in Q&A · Unanswered

  

  

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  scvelo for labeling data?

  wgao688 started Jan 17, 2024 in General

  

  

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  Tutorials for beginners

  huberax asked Jul 31, 2023 in Q&A · Unanswered

  

  

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  where to find the code/notebook for the figures on the scVelo paper

  enhancement

  Tianran1 asked Jan 6, 2024 in Q&A · Unanswered

  

  

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  Can scvelo be applied on long-read scRNA?

  enhancement

  WeiCSong asked Dec 21, 2023 in Q&A · Unanswered

  

  

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  Is there a way to specify the output directory to save the plot in pl.proportions(), pl.velocity_embedding_stream(), etc?

  NikTuzov asked Dec 14, 2023 in Q&A · Unanswered

  

  

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  Question about combining AnnData objects for use in scVelo

  jwalewski asked Dec 12, 2023 in Q&A · Unanswered

  

  

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  Recommend pipeline for aggregating multiple samples for scvelo?

  Pentayouth asked Dec 12, 2023 in Q&A · Unanswered

  

  

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  Subset adata object by Seurat clusters

  millerkaplanlab started Nov 24, 2023 in General

  

  

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  splice and unspliced counts per gene and cluster

  enhancement

  vasikara17 asked Nov 20, 2023 in Q&A · Unanswered

  

  

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  [Question] Could we apply this method to Visium data (No polyA-tailed method)?

  enhancement

  oghzzang asked Nov 20, 2023 in Q&A · Unanswered

  

  

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  Integration of 10x PolyA Data with Fixed RNA Profiling

  ckfromCN asked Nov 3, 2023 in Q&A · Unanswered

  

  

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