fix: allow report generation to handle pathlib objects #1904
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
mbhall88
changed the title
|
Kudos, SonarCloud Quality Gate passed!
|
johanneskoester
approved these changes
Oct 14, 2022
|
Thank you, good catch! |
johanneskoester
pushed a commit
that referenced
this pull request
Oct 14, 2022
🤖 I have created a release *beep* *boop* --- ## [7.16.0](v7.15.2...v7.16.0) (2022-10-14) ### Features * k8s: add --k8s-cpu-scalar ([#1857](#1857)) ([a067a1b](a067a1b)) ### Bug Fixes * allow report generation to handle pathlib objects ([#1904](#1904)) ([7c34656](7c34656)) * fix false reruns after checkpoints ([#1907](#1907)) ([dc5af12](dc5af12)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
In #1869 I added the ability to use a
pathlib.Pathobject in thescriptdirective. When generating a report where a rule has a Path in the script directory, this function was causing snakemake to error as it assumes the path is a string. This PR makes it explicitly a string.QC
docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).