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fix: allow script directive to take pathlib Path #1869

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merged 1 commit into from Sep 21, 2022
Merged

fix: allow script directive to take pathlib Path #1869

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2 changes: 2 additions & 0 deletions snakemake/script.py
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Expand Up @@ -1498,6 +1498,8 @@ def script(
"""
Load a script from the given basedir + path and execute it.
"""
if isinstance(path, Path):
path = str(path)

path, source, language, is_local = get_source(
path, SourceCache(runtime_sourcecache_path), basedir, wildcards, params
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4 changes: 3 additions & 1 deletion tests/test_script/Snakefile
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@@ -1,3 +1,5 @@
from pathlib import Path


configfile: "config.yaml"

Expand Down Expand Up @@ -28,7 +30,7 @@ rule:
output:
"test.in"
script:
"scripts/test.py"
Path("scripts/test.py")

rule:
output:
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