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fix: fix falsely triggered reruns if input files are obtained via workflow.source_path() #1862

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merged 3 commits into from Sep 21, 2022
Merged

fix: fix falsely triggered reruns if input files are obtained via workflow.source_path() #1862

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4e9018a
fix: fix falsely triggered reruns if input files are obtained via wor…
johanneskoester Sep 15, 2022
adc4875
fmt
johanneskoester Sep 15, 2022
d70419b
Merge branch 'main' into fix/input-set-changes
johanneskoester Sep 20, 2022
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8 changes: 7 additions & 1 deletion snakemake/persistence.py
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Expand Up @@ -20,6 +20,7 @@
from snakemake.logging import logger
from snakemake.jobs import jobfiles
from snakemake.utils import listfiles
from snakemake.io import is_flagged, get_flag_value


class Persistence:
Expand Down Expand Up @@ -419,7 +420,12 @@ def _conda_env(self, job):

@lru_cache()
def _input(self, job):
return sorted(job.input)
get_path = (
lambda f: get_flag_value(f, "sourcecache_entry").get_path_or_uri()
if is_flagged(f, "sourcecache_entry")
else f
)
return sorted(get_path(f) for f in job.input)

@lru_cache()
def _log(self, job):
Expand Down