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fix: declare associative arrays in bash scripts #1844

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merged 1 commit into from Sep 2, 2022
Merged

fix: declare associative arrays in bash scripts #1844

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2 changes: 1 addition & 1 deletion snakemake/script.py
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Expand Up @@ -351,7 +351,7 @@ def encode_snakemake(self, smk: Snakemake) -> str:
main_aa[var] = val

arrays.append(f"{self.prefix}={self.dict_to_aa(main_aa)}")
return "\n".join(arrays)
return "\n".join([f"declare -A {aa}" for aa in arrays])

@staticmethod
def dict_to_aa(d: dict) -> str:
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