fix: declare associative arrays (#1844)

snakemake · Sep 2, 2022 · 90ae449 · 90ae449
1 parent c613ed2
commit 90ae449
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakemake/script.py b/snakemake/script.py
@@ -351,7 +351,7 @@ def encode_snakemake(self, smk: Snakemake) -> str:
                 main_aa[var] = val
 
         arrays.append(f"{self.prefix}={self.dict_to_aa(main_aa)}")
-        return "\n".join(arrays)
+        return "\n".join([f"declare -A {aa}" for aa in arrays])
 
     @staticmethod
     def dict_to_aa(d: dict) -> str: