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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: add wrapper to samtools collate
#2929 opened May 7, 2024 by fgvieira Loading…
1 task done
fix: issue #366 and #2649
#2928 opened May 7, 2024 by fgvieira Loading…
1 task done
feat: add samtools markdup wrapper
#2926 opened May 7, 2024 by fgvieira Loading…
1 task done
chore: release 3.11.0
autorelease: pending
#2925 opened May 7, 2024 by github-actions bot Loading…
perf: autobump bio/cnv_facets
bio/cnv_facets
#2775 opened Mar 29, 2024 by snakedeploy-bot bot Loading…
feat: All ngsderive subcommands
#2732 opened Mar 8, 2024 by tdayris Loading…
1 task done
7
feat: add aria2c wrapper
#2725 opened Mar 7, 2024 by fgvieira Loading…
1 task done
2
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
8
feat: add Orthanq candidates hla and virus wrappers
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
11
perf: autobump bio/kallisto/quant
bio/kallisto/quant
#2247 opened Nov 3, 2023 by snakedeploy-bot bot Loading…
3
perf: autobump bio/manta
bio/manta
#2114 opened Oct 31, 2023 by snakedeploy-bot bot Loading…
perf: autobump bio/gdc-client/download
bio/gdc-client/download Stale
#2031 opened Oct 31, 2023 by snakedeploy-bot bot Loading…
1
feat: add wrapper for metaDMG
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
feat: add ngsngs wrapper
Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: Pcaexplorer pcaplot
#1728 opened Aug 9, 2023 by tdayris Loading…
1 task done
4
feat: new inphared-db wrapper
Stale
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
12
fix: name of bamqc
Stale
#1464 opened Jun 29, 2023 by christopher-schroeder Loading…
1 task done
6
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
4
fix: Allow concurrent and large refgenie downloads
Stale
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
8
perf: autobump bio/trimmomatic/se
bio/trimmomatic/se
#869 opened Nov 11, 2022 by snakedeploy-bot bot Loading…
perf: autobump bio/trimmomatic/pe
bio/trimmomatic/pe
#778 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
perf: autobump bio/dragmap/align
bio/dragmap/align
#775 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/rubic
bio/rubic
#631 opened Oct 26, 2022 by snakedeploy-bot bot Loading…
Update wrapper documentation
Stale
#392 opened Jul 22, 2021 by tdayris Loading…
10 of 12 tasks
6
Add GATK ValidateVariants
stale: contribution welcome Please feel free to finalize this work. Stale
#390 opened Jul 19, 2021 by G-kodes Loading…
12 tasks done
7
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