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Describe the bug
Currently the conda environment associdated with the deepvariant wrapper cannot be installed.
Logs
(snakemake) xxxx:~/Git/snakemake-wrappers/bio/deepvariant/test$ snakemake -c 6 --use-conda gvcf_calls/a.g.vcf.gz
Building DAG of jobs...
Creating conda environment https://github.com/snakemake/snakemake-wrappers/raw/master/bio/deepvariant/environment.yaml...
Downloading and installing remote packages.
CreateCondaEnvironmentException:
Could not create conda environment from /tmp/tmpk97jy7tx.yaml:
Command:
mamba env create --quiet --file "/home/vitoz/Git/snakemake-wrappers/bio/deepvariant/test/.snakemake/conda/47ab421ca857ecac810448669a2010ab_.yaml" --prefix "/home/vitoz/Git/snakemake-wrappers/bio/deepvariant/test/.snakemake/conda/47ab421ca857ecac810448669a2010ab_"
Output:
Could not solve for environment specs
The following package could not be installed
└─ deepvariant 1.4** is uninstallable because it requires
└─ tensorflow-estimator 2.0.* , which does not exist (perhaps a missing channel).
Minimal example
cd snakemake-wrappers/bio/deepvariant/test
snakemake -c 6 --use-conda gvcf_calls/a.g.vcf.gz
Additional context
Run on Ubuntu 23.04
The text was updated successfully, but these errors were encountered:
Snakemake version
Describe the bug
Currently the conda environment associdated with the
deepvariant
wrapper cannot be installed.Logs
Minimal example
Additional context
Run on
Ubuntu 23.04
The text was updated successfully, but these errors were encountered: