Merge branch 'main' into datatype-class-refactor

sktime · May 14, 2024 · 0321f22 · 0321f22
2 parents ce477b9 + e383fed
commit 0321f22
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diff --git a/.all-contributorsrc b/.all-contributorsrc
@@ -2116,7 +2116,8 @@
       "profile": "https://www.linkedin.com/in/pranav-prajapati-a5b413226/",
       "contributions": [
         "code",
-        "test"
+        "test",
+        "bug"
       ]
     },
     {
@@ -2342,7 +2343,9 @@
       "profile": "https://github.com/Ram0nB",
       "contributions": [
         "doc",
-        "code"
+        "code",
+        "bug",
+        "test"
       ]
     },
     {
@@ -2607,15 +2610,199 @@
         "code"
       ]
     },
+    {
+      "login": "ShreeshaM07",
+      "name": "Shreesha M",
+      "avatar_url": "https://avatars.githubusercontent.com/u/120820143?s=400&v=4",
+      "profile": "https://github.com/ShreeshaM07",
+      "contributions": [
+        "bug",
+        "code",
+        "test"
+      ]
+    },
     {
       "login": "geetu040",
       "name": "Armaghan",
       "avatar_url": "https://avatars.githubusercontent.com/u/90601662?s=96&v=4",
       "profile": "https://github.com/geetu040",
       "contributions": [
+        "code",
         "doc",
         "maintenance"
       ]
+    },
+    {
+      "login": "Xinyu-Wu-0000",
+      "name": "Xinyu Wu",
+      "avatar_url": "https://avatars.githubusercontent.com/u/57612792?v=4",
+      "profile": "https://github.com/Xinyu-Wu-0000",
+      "contributions": [
+        "bug",
+        "code",
+        "test"
+      ]
+    },
+    {
+      "login": "meraldoantonio",
+      "name": "Meraldo Antonio",
+      "avatar_url": "https://avatars.githubusercontent.com/u/37468543?v=4",
+      "profile": "https://github.com/meraldoantonio",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "memeo-pro",
+      "name": "Yash Edake",
+      "avatar_url": "https://avatars.githubusercontent.com/memeo-pro",
+      "profile": "https://github.com/MEMEO-PRO",
+      "contributions": [
+        "maintenance",
+        "bug"
+      ]
+    },
+    {
+      "login": "deysanjeeb",
+      "name": "Sanjeeb Dey",
+      "avatar_url": "https://avatars.githubusercontent.com/u/39940629?v=4",
+      "profile": "https://github.com/deysanjeeb",
+      "contributions": [
+        "maintenance"
+      ]
+    },
+    {
+      "login": "YashKhare20",
+      "name": "Yash Khare",
+      "avatar_url": "https://avatars.githubusercontent.com/u/92680366?s=400",
+      "profile": "https://github.com/YashKhare20",
+      "contributions": [
+        "code",
+        "doc"
+      ]
+    },
+    {
+      "login": "ianspektor",
+      "name": "Ian Spektor",
+      "avatar_url": "https://avatars.githubusercontent.com/u/49082859?v=4",
+      "profile": "https://github.com/ianspektor",
+      "contributions": [
+        "code",
+        "doc"
+      ]
+    },
+    {
+      "login": "javiber",
+      "name": "Javier Berneche",
+      "avatar_url": "https://avatars.githubusercontent.com/u/3588715?v=4",
+      "profile": "https://github.com/javiber",
+      "contributions": [
+        "code",
+        "doc"
+      ]
+    },
+    {
+      "login": "fnhirwa",
+      "name": "Felix Hirwa Nshuti",
+      "avatar_url": "https://avatars.githubusercontent.com/u/67042527?s=64&v=4",
+      "profile": "https://github.com/fnhirwa",
+      "contributions": [
+        "code",
+        "maintenance"
+      ]
+    },
+    {
+      "login": "SamruddhiNavale",
+      "name": "Samruddhi Navale",
+      "avatar_url": "https://avatars.githubusercontent.com/u/86359115?v=4",
+      "profile": "https://github.com/SamruddhiNavale",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "vandit98",
+      "name": "Vandit Tyagi",
+      "avatar_url": "https://avatars.githubusercontent.com/u/91458535?v=4",
+      "profile": "https://github.com/vandit98",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "MMTrooper",
+      "name": "Michael Mwimali",
+      "avatar_url": "https://avatars.githubusercontent.com/u/89777534?v=4",
+      "profile": "https://github.com/MMTrooper",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "manuel-munoz-aguirre",
+      "name": "Manuel Muñoz Aguirre",
+      "avatar_url": "https://avatars.githubusercontent.com/u/5576458?v=4",
+      "profile": "https://github.com/manuel-munoz-aguirre",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "morestart",
+      "name": "ctl",
+      "avatar_url": "https://avatars.githubusercontent.com/u/35556811",
+      "profile": "https://github.com/morestart",
+      "contributions": [
+        "bug"
+      ]
+    },
+    {
+      "login": "anteemony",
+      "name": "Anthony Okonneh",
+      "avatar_url": "https://avatars.githubusercontent.com/u/90141191?v=4",
+      "profile": "https://github.com/Anteemony",
+      "contributions": [
+        "doc"
+      ]
+    },
+    {
+      "login": "ssabarwal",
+      "name": "Shlok Sabarwal",
+      "avatar_url": "https://gravatar.com/avatar/cbdbaac712ae282d730cd3028e862d45?s=400&d=robohash&r=x",
+      "prifle": "https://www.github.com/shlok191/",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "mobley-trent",
+      "name": "Eddy Oyieko",
+      "avatar_url": "https://avatars.githubusercontent.com/u/67474838?v=4",
+      "profile": "https://github.com/mobley-trent",
+      "contributions": [
+        "code",
+        "doc"
+      ]
+    },
+    {
+      "login": "toandaominh1997",
+      "name": "Henry Dao",
+      "avatar_url": "https://avatars.githubusercontent.com/u/18400648?v=4",
+      "profile": "https://github.com/toandaominh1997",
+      "contributions": [
+        "bug",
+        "code",
+        "test"
+      ]
+    },
+    {
+      "login": "slavik57",
+      "name": "Slava Shpitalny",
+      "avatar_url": "https://avatars.githubusercontent.com/u/6184997?v=4",
+      "profile": "https://github.com/slavik57",
+      "contributions": [
+        "maintenance"
+      ]
     }
   ]
 }
diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
@@ -53,7 +53,7 @@ Please go through the checklist below. Please feel free to remove points if they
 - [ ] I've added myself to the [list of contributors](https://github.com/sktime/sktime/blob/main/CONTRIBUTORS.md) with any new badges I've earned :-)
   How to: add yourself to the [all-contributors file](https://github.com/sktime/sktime/blob/main/.all-contributorsrc) in the `sktime` root directory (not the `CONTRIBUTORS.md`). Common badges: `code` - fixing a bug, or adding code logic. `doc` - writing or improving documentation or docstrings. `bug` - reporting or diagnosing a bug (get this plus `code` if you also fixed the bug in the PR).`maintenance` - CI, test framework, release.
   See here for [full badge reference](https://allcontributors.org/docs/en/emoji-key)
-- [ ] Optionally, I've added myself and possibly others to the [CODEOWNERS](https://github.com/sktime/sktime/blob/main/CODEOWNERS) file - do this if you want to become the owner or maintainer of an estimator you added.
+- [ ] Optionally, for added estimators: I've added myself and possibly to the `maintainers` tag - do this if you want to become the owner or maintainer of an estimator you added.
   See here for further details on the [algorithm maintainer role](https://www.sktime.net/en/latest/get_involved/governance.html#algorithm-maintainers).
 - [ ] The PR title starts with either [ENH], [MNT], [DOC], or [BUG]. [BUG] - bugfix, [MNT] - CI, test framework, [ENH] - adding or improving code, [DOC] - writing or improving documentation or docstrings.
 

diff --git a/.github/actions/test-component/action.yml b/.github/actions/test-component/action.yml
@@ -52,6 +52,7 @@ runs:
       run: >-
         python3
         -m pytest
+        sktime/tests
         sktime/${{ inputs.sktime-component-identifier }}
         --matrixdesign ${{ inputs.sub-sample-estimators }}
         --only_changed_modules ${{ inputs.test-affected-estimators }}

diff --git a/.github/workflows/cancel.yml b/.github/workflows/cancel.yml
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -8,6 +8,10 @@ on:
     branches:
       - main
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   code-quality:
     name: code-quality
@@ -23,7 +27,7 @@ jobs:
         run: python3 -m pip install pre-commit
       - id: changed-files
         name: identify modified files
-        uses: tj-actions/changed-files@v42
+        uses: tj-actions/changed-files@v44
       - name: run pre-commit hooks on modified files
         run: pre-commit run --color always --files ${{ steps.changed-files.outputs.all_changed_files }} --show-diff-on-failure
       - name: check missing __init__ files
@@ -178,7 +182,7 @@ jobs:
 
   test-cython-estimators:
     needs: test-nosoftdeps
-    runs-on: macos-latest
+    runs-on: macos-13
     steps:
       - uses: actions/checkout@v4
 
@@ -263,7 +267,7 @@ jobs:
       fail-fast: false  # to not fail all combinations if just one fail
       matrix:
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
-        os: [ubuntu-latest, macos-latest, windows-latest]
+        os: [ubuntu-latest, macos-13, windows-latest]
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4

diff --git a/.github/workflows/test_all.yml b/.github/workflows/test_all.yml
@@ -32,7 +32,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}
@@ -64,7 +64,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
         sktime-component:
@@ -107,7 +107,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}

diff --git a/.github/workflows/test_base.yml b/.github/workflows/test_base.yml
@@ -32,7 +32,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}

diff --git a/.github/workflows/test_datasets.yml b/.github/workflows/test_datasets.yml
@@ -17,7 +17,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}
@@ -57,7 +57,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}

diff --git a/.github/workflows/test_module.yml b/.github/workflows/test_module.yml
@@ -64,7 +64,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
         sktime-component: ${{ fromJSON(needs.detect.outputs.module_changes) }}

diff --git a/.github/workflows/test_other.yml b/.github/workflows/test_other.yml
@@ -45,7 +45,7 @@ jobs:
           - "3.11"
           - "3.12"
         operating-system:
-          - macos-latest
+          - macos-13
           - ubuntu-latest
           - windows-latest
     runs-on: ${{ matrix.operating-system }}

diff --git a/.github/workflows/update_contributors.yml b/.github/workflows/update_contributors.yml
@@ -2,6 +2,8 @@ name: Update Contributors
 
 on:
   push:
+    branches-ignore:
+      - main
     paths:
       - '.all-contributorsrc'
 

diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml
@@ -34,7 +34,7 @@ jobs:
     strategy:
       fail-fast: false  # to not fail all combinations if just one fail
       matrix:
-        os: [ubuntu-latest, macos-latest]
+        os: [ubuntu-latest, macos-13]
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
 
     steps:

diff --git a/.gitignore b/.gitignore
@@ -168,3 +168,5 @@ examples/local/
 
 # py-spy profiler output
 profile.svg
+test_output/*
+mlruns/*