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MAINT: more backporting/doc updating for 1.7.2 #14981

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merged 2 commits into from Nov 5, 2021
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MAINT: more backporting/doc updating for 1.7.2 #14981

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d450304
TST: silence test failures on macOS for `beta.ppf` overflow (#14938)
rgommers Oct 30, 2021
542c017
DOC: update 1.7.2 relnotes
tylerjereddy Nov 5, 2021
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24 changes: 22 additions & 2 deletions doc/release/1.7.2-notes.rst
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Expand Up @@ -7,23 +7,30 @@ SciPy 1.7.2 Release Notes
SciPy 1.7.2 is a bug-fix release with no new features
compared to 1.7.1. Notably, the release includes wheels
for Python 3.10, and wheels are now built with a newer
version of OpenBLAS, 0.3.17.
version of OpenBLAS, 0.3.17. Python 3.10 wheels are provided
for MacOS x86_64 (thin, not universal2 or arm64 at this time),
and Windows/Linux 64-bit. Many wheels are now built with newer
versions of manylinux, which may require newer versions of pip.

Authors
=======

* Peter Bell
* da-woods +
* Isuru Fernando
* Ralf Gommers
* Matt Haberland
* Nicholas McKibben
* Ilhan Polat
* Judah Rand +
* Tyler Reddy
* Pamphile Roy
* Charles Harris
* Matti Picus
* Hugo van Kemenade
* Jacob Vanderplas

A total of 10 people contributed to this release.
A total of 14 people contributed to this release.
People with a "+" by their names contributed a patch for the first time.
This list of names is automatically generated, and may not be fully complete.

Expand All @@ -35,6 +42,10 @@ Issues closed for 1.7.2
* `#14465 <https://github.com/scipy/scipy/issues/14465>`__: BUG: n-d interpolation parameter provided to geometric_slerp
* `#14599 <https://github.com/scipy/scipy/issues/14599>`__: SciPy 1.7 builds as zipped egg, ruining imports
* `#14606 <https://github.com/scipy/scipy/issues/14606>`__: BUG: crash / core dump when calling scipy.stats.beta.ppf with...
* `#14732 <https://github.com/scipy/scipy/issues/14732>`__: CI, TST: pre-release failures for scipy/interpolate/tests/test_rbfinterp.py
* `#14802 <https://github.com/scipy/scipy/issues/14802>`__: CI: Azure Main coverage job failure
* `#14829 <https://github.com/scipy/scipy/issues/14829>`__: macOS CI failing with \`ld: library not found for -lSystem\`
* `#14887 <https://github.com/scipy/scipy/issues/14887>`__: BUG: scipy.stats.multivariate_normal.logpdf mutates some inputs

Pull requests for 1.7.2
-----------------------
Expand All @@ -48,3 +59,12 @@ Pull requests for 1.7.2
* `#14616 <https://github.com/scipy/scipy/pull/14616>`__: REL: update build dependency versions in pyproject.toml for 1.7.2
* `#14618 <https://github.com/scipy/scipy/pull/14618>`__: FIX: raise RuntimeWarning when Boost evaluation_error is encountered
* `#14672 <https://github.com/scipy/scipy/pull/14672>`__: BLD: add \`zip_safe=False\` to the \`setup()\` call
* `#14791 <https://github.com/scipy/scipy/pull/14791>`__: MAINT: SciPy 1.7.2 prep/backports
* `#14803 <https://github.com/scipy/scipy/pull/14803>`__: MAINT: disable include/source coverage warning.
* `#14813 <https://github.com/scipy/scipy/pull/14813>`__: Added missing np.import_array()
* `#14831 <https://github.com/scipy/scipy/pull/14831>`__: CI: Add stdlib to LD_LIBRARY_PATH
* `#14893 <https://github.com/scipy/scipy/pull/14893>`__: BUG: Fix alignment errors due to relaxed stride checking
* `#14897 <https://github.com/scipy/scipy/pull/14897>`__: BUG: avoid mutating inputs in multivariate distributions
* `#14921 <https://github.com/scipy/scipy/pull/14921>`__: MAINT: "backport" 3.10 support
* `#14937 <https://github.com/scipy/scipy/pull/14937>`__: MAINT: backports for 1.7.2, plus update Pythran min version to...
* `#14938 <https://github.com/scipy/scipy/pull/14938>`__: TST: silence test failures on macOS for \`beta.ppf\` overflow
8 changes: 8 additions & 0 deletions scipy/stats/tests/test_distributions.py
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Expand Up @@ -7,6 +7,7 @@
import pickle
import os
import json
import platform

from numpy.testing import (assert_equal, assert_array_equal,
assert_almost_equal, assert_array_almost_equal,
Expand Down Expand Up @@ -37,6 +38,10 @@
# python -OO strips docstrings
DOCSTRINGS_STRIPPED = sys.flags.optimize > 1

# Failing on macOS 11, Intel CPUs. See gh-14901
MACOS_INTEL = (sys.platform == 'darwin') and (platform.machine() == 'x86_64')


# distributions to skip while testing the fix for the support method
# introduced in gh-13294. These distributions are skipped as they
# always return a non-nan support for every parametrization.
Expand Down Expand Up @@ -2840,6 +2845,7 @@ def test_fit_duplicated_fixed_parameter(self):
x = [0.1, 0.5, 0.6]
assert_raises(ValueError, stats.beta.fit, x, fa=0.5, fix_a=0.5)

@pytest.mark.skipif(MACOS_INTEL, reason="Overflow, see gh-14901")
def test_issue_12635(self):
# Confirm that Boost's beta distribution resolves gh-12635.
# Check against R:
Expand All @@ -2851,6 +2857,7 @@ def test_issue_12635(self):
p, a, b = 0.9999999999997369, 75.0, 66334470.0
assert_allclose(stats.beta.ppf(p, a, b), 2.343620802982393e-06)

@pytest.mark.skipif(MACOS_INTEL, reason="Overflow, see gh-14901")
def test_issue_12794(self):
# Confirm that Boost's beta distribution resolves gh-12794.
# Check against R.
Expand All @@ -2868,6 +2875,7 @@ def test_issue_12794(self):
res = stats.beta.sf(inv, count_list + 1, 100000 - count_list)
assert_allclose(res, p)

@pytest.mark.skipif(MACOS_INTEL, reason="Overflow, see gh-14901")
def test_issue_12796(self):
# Confirm that Boost's beta distribution succeeds in the case
# of gh-12796
Expand Down