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FEA add PredictionErrorDisplay #18020

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merged 182 commits into from Nov 25, 2022

Commits on Jul 28, 2020

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  4. check with an example

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  5. reset previous style

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  7. change another example

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  8. DOC update another example

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  9. PEP8

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  10. add some tests

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  9. docstring

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  3. revert pre-commit change

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  2. doc fix

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  3. fix tests

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  4. TST add residuals test

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  5. fixes

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  2. target 1.2

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  3. switch color

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  10. DOC outdated versionadded

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Commits on Oct 31, 2022

  1. Update doc/modules/model_evaluation.rst

    Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
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  2. Apply suggestions from code review

    Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
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  10. FIX Fixes HTML repr when get_params contains classes (scikit-learn#24512

    )
    
    
    
    Co-authored-by: Adrin Jalali <adrin.jalali@gmail.com>
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  12. MAINT Clean deprecation for 1.2: get_feature_names (scikit-learn#24395)

    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  14. DOC Ensures that sklearn.tree._export.plot_tree passes numpydoc valid…

    …ation (scikit-learn#24559)
    
    Co-authored-by: Juan Martin Loyola <jmloyola@outlook.com>
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  15. DOC Ensure that sklearn.utils.is_scalar_nan passes numpydoc validation (

    scikit-learn#24562)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  17. ENH change Ridge tol to 1e-4 (scikit-learn#24465)

    * ENH set defaul tol of Ridge to 1e-4 instead of 1e-3
    
    * MNT rename internal least square method in discrimant_analysis
    
    * DOC add versionchanged
    
    * DOC add whats_new entry
    
    * DOC add pr to whatsnew
    
    * DOC better versionchanged message
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  19. CI remove LGTM (scikit-learn#24592)

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  21. DOC Ensures that available_if passes numpydoc validation (scikit-lear…

    …n#24586)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  23. API Deprecate the extra keyword arguments of utils.extmath.density (s…

    …cikit-learn#24523)
    
    Co-authored-by: Meekail Zain <34613774+Micky774@users.noreply.github.com>
    Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
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  29. DOC Ensures that sklearn.utils.extmath.weighted_mode passes numpydoc …

    …validation (scikit-learn#24571)
    
    Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr>
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  32. MAINT Clean deprecation for 1.2: load_boston (scikit-learn#24603)

    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  34. DOC Check sha256 digests of tarballs in tutorial and examples before …

    …extraction (scikit-learn#24617)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  36. API Add "auto" value and deprecate default value for `normalized_st…

    …ress` (scikit-learn#23834)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  37. DOC Ensures that svd_flip passes numpydoc validation (scikit-learn#24581

    )
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  38. ENH FEA add interaction constraints to HGBT (scikit-learn#21020)

    Co-authored-by: Loïc Estève <loic.esteve@ymail.com>
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  39. DOC add a docstring example for the learning_curve function (scikit-l…

    …earn#24546)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
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  43. ENH Introduces set_output API for pandas output (scikit-learn#23734)

    * Introduces set_output API for all transformers
    
    * TransformerMixin inherits from _SetOutputMixin
    
    * Adds tests
    
    * Adds whatsnew
    
    * Adds example on using set_output API
    
    * Adds developer docs for set_output
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  44. CI Use GITHUB_OUTPUT instead of deprecated set-output (scikit-learn#2…

    …4644)
    
    * CI Use GITHUB_ENV instead of deprecated set-output
    
    * CI [cd build gh]
    
    * FIX Echo into github environment [cd build gh]
    
    * FIX Use GITHUB_OUTPUT [cd build gh]
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  47. DOC Use :doi: directive for KMeans (scikit-learn#24641)

    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  48. DOC Rework plot_roc.py example (scikit-learn#24200)

    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    Co-authored-by: Chiara Marmo <cmarmo@users.noreply.github.com>
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    4 people committed Oct 31, 2022
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  51. MAINT PairwiseDistancesReduction: Update comments and remove unused…

    … symbols (scikit-learn#24625)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  53. MAINT Clean deprecation for 1.2: load_boston follow-up (scikit-learn#…

    …24653)
    
    * remove load_boston references from the docs
    
    * iter
    
    * update poor_score
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  55. OPTIM use pairwise_distances_argmin in NearestCentroid.predict (sciki…

    …t-learn#24645)
    
    
    
    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
    2 people authored and glemaitre committed Oct 31, 2022
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  56. MAINT use nanmin to replace nan by finite values in ranking of Search…

    …CV (scikit-learn#24543)
    
    
    Co-authored-by: Tim Head <betatim@gmail.com>
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    Co-authored-by: Loïc Estève <loic.esteve@ymail.com>
    4 people committed Oct 31, 2022
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  57. MAINT PairwiseDistancesReduction: Rename some symbols and files (sc…

    …ikit-learn#24623)
    
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    3 people authored and glemaitre committed Oct 31, 2022
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  58. DOC Ensures that sklearn.utils.extmath.randomized_svd passes numpyd…

    …oc validation (scikit-learn#24607)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  59. DOC Ensures that if_delegate_has_method passes numpydoc validation (s…

    …cikit-learn#24633)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    3 people committed Oct 31, 2022
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  61. DOC Ensures that sklearn.utils.extmath.fast_logdet passes numpydoc va…

    …lidation (scikit-learn#24605)
    
    Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr>
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  62. MNT Do not update docs with deprecated decorator (scikit-learn#24410)

    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  65. MAINT Bump min dependencies for 1.2 (scikit-learn#24650)

    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
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  69. DOC use KBinsDiscretizer in lieu of KMeans in vector quantization exa…

    …mple (scikit-learn#24374)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
    3 people committed Oct 31, 2022
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  72. DOC Fix typo and adjust wording in set_output example (scikit-learn…

    …#24689)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  73. DOC Improve docstring around set_output (scikit-learn#24672)

    * DOC Improve docstring around set_output
    
    * DOC Improve docs around set_output
    
    * DOC Address comments
    
    * DOC Better grammar
    
    * DOC Improve wording
    
    * DOC Improves docstring in set_config
    thomasjpfan authored and glemaitre committed Oct 31, 2022
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  74. ENH Makes OneToOneFeatureMixin and ClassNamePrefixFeaturesOutMixin pu…

    …blic (scikit-learn#24688)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
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  76. MAINT Fix build when SKLEARN_OPENMP_PARALLELISM_ENABLED=False (scikit…

    …-learn#24682)
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    lesteve and glemaitre committed Oct 31, 2022
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  78. CI Add wheel builds for Python 3.11 (scikit-learn#24446)

    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    3 people authored and glemaitre committed Oct 31, 2022
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  79. CI Remove remaining windows 32 references (scikit-learn#24657)

    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  84. DOC fix deprecation warning raised by KMeans and Matplotlib (scikit-l…

    …earn#24692)
    
    Co-authored-by: Tim Head <betatim@gmail.com>
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  87. DOC Improve narrative of plot_roc_crossval example (scikit-learn#24710)

    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    ArturoAmorQ and glemaitre committed Oct 31, 2022
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  88. FEA add (single) Cholesky Newton solver to GLMs (scikit-learn#24637)

    * FEA add NewtonSolver, CholeskyNewtonSolver and QRCholeskyNewtonSolver
    
    * ENH better singular hessian special solve
    
    * CLN fix some typos found by reviewer
    
    * TST assert ConvergenceWarning is raised
    
    * MNT add BaseCholeskyNewtonSolver
    
    * WIP colinear design in GLMs
    
    * FIX _solve_singular
    
    * FIX false unpacking in
    
    * TST add tests for unpenalized GLMs
    
    * TST fix solutions of glm_dataset
    
    * ENH add SVDFallbackSolver
    
    * CLN remove SVDFallbackSolver
    
    * ENH use gradient step for singular hessians
    
    * ENH print iteration number in warnings
    
    * TST improve test_linalg_warning_with_newton_solver
    
    * CLN LinAlgWarning fron scipy.linalg
    
    * ENH more robust hessian
    
    * ENH increase maxls for lbfgs to make it more robust
    
    * ENH add hessian_warning for too many negative hessian values
    
    * CLN some warning messages
    
    * ENH add lbfgs_step
    
    * ENH use lbfgs_step for hessian_warning
    
    * TST make them pass
    
    * TST tweek rtol for lbfgs
    
    * TST add rigoros test for GLMs
    
    * TST improve test_warm_start
    
    * ENH improve lbfgs options for better convergence
    
    * CLN fix test_warm_start
    
    * TST fix assert singular values in datasets
    
    * CLN address most review comments
    
    * ENH enable more vebosity levels for lbfgs
    
    * DOC add whatsnew
    
    * CLN remove xfail and clean a bit
    
    * CLN docstring about minimum norm
    
    * More informative repr for the glm_dataset fixture cases
    
    * Forgot to run black
    
    * CLN remove unnecessary filterwarnings
    
    * CLN address review comments
    
    * Trigger [all random seeds] on the following tests:
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * CLN add comment for lbfgs ftol=64 * machine precision
    
    * CLN XXX code comment
    
    * Trigger [all random seeds] on the following tests:
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * CLN link issue and remove code snippet in comment
    
    * Trigger [all random seeds] on the following tests:
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * CLN add catch_warnings
    
    * Trigger [all random seeds] on the following tests:
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * Trigger [all random seeds] on the following tests:
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * [all random seeds]
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * Trigger with -Werror [all random seeds]
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * ENH increase maxls to 50
    
    * [all random seeds]
    
    test_glm_regression
    test_glm_regression_hstacked_X
    test_glm_regression_vstacked_X
    test_glm_regression_unpenalized
    test_glm_regression_unpenalized_hstacked_X
    test_glm_regression_unpenalized_vstacked_X
    test_warm_start
    
    * Revert "Trigger with -Werror [all random seeds]"
    
    This reverts commit 99f4cf9.
    
    * TST add catch_warnings to filterwarnings
    
    * TST adapt tests for newton solvers
    
    * CLN cleaner gradient step with gradient_times_newton
    
    * DOC add whatsnew
    
    * ENH always use lbfgs as fallback
    
    * TST adapt rtol
    
    * TST fix test_linalg_warning_with_newton_solver
    
    * CLN address some review comments
    
    * Improve tests related to convergence warning on collinear data
    
    * overfit -> fit
    
    * Typo in comment
    
    * Apply suggestions from code review
    
    * ENH fallback_lbfgs_solve
    - Do not use lbfgs steps, fall back complete to lbfgs
    
    * ENH adapt rtol
    
    * Improve test_linalg_warning_with_newton_solver
    
    * Better comments
    
    * Fixed Hessian casing and improved warning messages
    
    * [all random seeds]
    
    test_linalg_warning_with_newton_solver
    
    * Ignore ConvergenceWarnings for now if convergence is good
    
    * CLN remove counting of warnings
    
    * ENH fall back to lbfgs if line search did not converge
    
    * DOC better comment on performance bottleneck
    
    * Update GLM related examples to use the new solver
    
    * CLN address reviewer comments
    
    * EXA improve some wordings
    
    * CLN do not pop "solver in parameter constraints
    
    * CLN fix typos
    
    * DOC fix docstring
    
    * CLN remove solver newton-qr-cholesky
    
    * DOC update PR number in whatsnew
    
    * CLN address review comments
    
    * CLN remove unnecessary catch_warnings
    
    * CLN address some review comments
    
    * DOC more precise whatsnew
    
    * CLN use init_zero_coef
    
    * CLN use and test init_zero_coef
    
    * CLN address some review comments
    
    * CLN mark NewtonSolver as private by leading underscore
    
    * CLN exact comments for inner_solve
    
    * TST add test_newton_solver_verbosity
    
    * TST extend test_newton_solver_verbosity
    
    * TST logic in test_glm_regression_unpenalized
    
    * TST use count_nonzero
    
    * CLN remove super rare line search checks
    
    * MNT move Newton solver to new file _newton_solver.py
    
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
    3 people authored and glemaitre committed Oct 31, 2022
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  89. MAINT force NumPy version for building scikit-learn for CPython 3.10 …

    …in Windows (scikit-learn#24742)
    
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    3 people committed Oct 31, 2022
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  90. API add named_transformers attribute to FeatureUnion (scikit-learn#20331

    )
    
    
    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    3 people committed Oct 31, 2022
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  92. FIX check_estimator fails when validating SGDClassifier with log_loss (

    …scikit-learn#24071)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    2 people authored and glemaitre committed Oct 31, 2022
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  94. FIX Fixes common test for requires_positive_X (scikit-learn#24667)

    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    thomasjpfan and glemaitre committed Oct 31, 2022
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  96. DOC add more info about the drop of support for 32-bit Python on Wind…

    …ows (scikit-learn#24761)
    
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
    glemaitre and ogrisel committed Oct 31, 2022
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  97. DOC convert confusion matrix to y_true/y_pred for classification_repo…

    …rt example (scikit-learn#24711)
    
    Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
    2 people authored and glemaitre committed Oct 31, 2022
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  100. ENH Add dtype preservation for Isomap (scikit-learn#24714)

    Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
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  104. ENH Add gamma='scale' option to RBFSampler (scikit-learn#24755)

    Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
    glevv and glemaitre committed Oct 31, 2022
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  106. DOC FIX Consistent formulae for metrics in the user guide (scikit-lea…

    …rn#24673)
    
    Co-authored-by: Mike Altonji <mikealtonji@gmail.com>
    Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
    3 people authored and glemaitre committed Oct 31, 2022
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  108. FIX bagging with SGD and early stopping throws ZeroDivisionError (sci…

    …kit-learn#23275)
    
    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    2 people authored and glemaitre committed Oct 31, 2022
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  109. ENH Allow path-like objects in load_svmlight_file. (scikit-learn#19075)

    Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
    2 people authored and glemaitre committed Oct 31, 2022
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  114. DOC fix suptitle

    glemaitre committed Oct 31, 2022
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  115. rever tight_layout

    glemaitre committed Oct 31, 2022
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Commits on Nov 23, 2022

  1. Apply suggestions from code review

    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  3. iter

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  4. iter

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  5. iter

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  6. iter

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Commits on Nov 24, 2022

  1. Apply suggestions from code review

    Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com>
    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  3. FIX/TST respond reviews

    glemaitre committed Nov 24, 2022
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  4. fix

    glemaitre committed Nov 24, 2022
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  5. Apply suggestions from code review

    Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
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  2. fix what's new

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  4. fix broken links

    jeremiedbb committed Nov 25, 2022
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