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[merge] [view] Feature request: Ability to delete an unseen allele line if it duplicates an ALT-containing line
#2195
opened May 27, 2024 by
PlatonB
Clarification on -e 0 flag and interpretation of discordance with PL-vs-PL and GT-vs-GT
#2194
opened May 23, 2024 by
goeckeritz
consensus
>chr1:1-1
leads to error FIXME: <chr>:<pos> .. idx=-<int>, ori_pos=<pos>
#2191
opened May 23, 2024 by
Fan-iX
Apart from the header, bcftools mpileup did not output any other content
requires-test-case
#2189
opened May 22, 2024 by
dongaoqian
bcftools mpileup + call seemingly confident in allele only present in a few reads?
requires-test-case
#2185
opened May 17, 2024 by
emos8710
"bcftools norm -m -any" prdocues "."
htslib-dependent
Cannot be fixed until htslib is fixed
#2173
opened Apr 29, 2024 by
shahamer
Could bcftools report all states of characters for very low coverage?
#2141
opened Mar 26, 2024 by
Axze-rgb
bcftools reheader Incomplete File if Output Same as Input
enhancement
#2140
opened Mar 26, 2024 by
DarioS
bcftools norm -m +any
gives incorrect AN
value when SNP and INDEL entries are merged
#2137
opened Mar 24, 2024 by
Fan-iX
Incorrect interpretation of fixed ALT homozygotes from bcftools filter?
requires-test-case
#2123
opened Mar 8, 2024 by
pmoizerv
problem changing the ploidy of female individuals on the sex chromosome
requires-test-case
#2122
opened Mar 8, 2024 by
TanguyMuller
Updating filter syntax and threshold ?
documentation
enhancement
#2101
opened Feb 18, 2024 by
davidyuyuan
bcftools-1.19 csq: output is not compatible with previous --local-csq format
#2073
opened Jan 9, 2024 by
mmokrejs
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