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.appveyor.yml
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.appveyor.yml
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# version format.
# you can use {branch} name in version format too
# version: 1.0.{build}-{branch}
version: 'vers.{build}'
# branches to build
branches:
except:
- gh-pages
# Do not build on tags (GitHub and BitBucket)
skip_tags: true
# Skipping commits affecting specific files (GitHub only). More details here: /docs/appveyor-yml
#skip_commits:
# files:
# - docs/*
# - '**/*.html'
# Appveyor Windows images are based on Visual studio version
image: Visual Studio 2019
# We use Mingw/Msys, so use pacman for installs
install:
- set HOME=.
- set MSYSTEM=MINGW64
- set PATH=C:/msys64/usr/bin;C:/msys64/mingw64/bin;%PATH%
- set MINGWPREFIX=x86_64-w64-mingw32
- "sh -lc \"pacman -S --noconfirm --needed base-devel mingw-w64-x86_64-toolchain mingw-w64-x86_64-autotools mingw-w64-x86_64-zlib mingw-w64-x86_64-bzip2 mingw-w64-x86_64-xz mingw-w64-x86_64-curl\""
# The user may have e.g. jkbonfield/bcftools branch FOO and an associated
# jkbonfield/htslib branch FOO. If so use that related htslib, obtained by
# munging $APPVEYOR_REPO_NAME. Otherwise we assume this is a PR only to
# bcftools and should be linked against samtools(org)/htslib develop branch.
clone_script:
- "sh -lc \"if test x$APPVEYOR_PULL_REQUEST_HEAD_REPO_NAME != x ; then git clone --branch=$APPVEYOR_PULL_REQUEST_HEAD_REPO_BRANCH https://github.com/$APPVEYOR_PULL_REQUEST_HEAD_REPO_NAME $APPVEYOR_BUILD_FOLDER ; else false ; fi || git clone --branch=$APPVEYOR_REPO_BRANCH https://github.com/$APPVEYOR_REPO_NAME $APPVEYOR_BUILD_FOLDER\""
- "sh -lc \"git show-branch --sha1-name HEAD"
- "sh -lc \"git clone --recurse-submodules --shallow-submodules --branch=$APPVEYOR_REPO_BRANCH https://github.com/`echo $APPVEYOR_REPO_NAME|sed 's#/bcftools#/htslib#'`.git $APPVEYOR_BUILD_FOLDER/htslib || git clone --recurse-submodules --shallow-submodules https://github.com/samtools/htslib.git $APPVEYOR_BUILD_FOLDER/htslib \""
- "sh -lc \"cd $APPVEYOR_BUILD_FOLDER/htslib && git show-branch --sha1-name HEAD\""
build_script:
- set HOME=.
- set MSYSTEM=MINGW64
- set PATH=C:/msys64/usr/bin;C:/msys64/mingw64/bin;%PATH%
- "sh -lc \"(cd htslib; autoreconf -i)\""
- "sh -lc \"autoreconf -i && ./configure --enable-werror && make -j2\""
test_script:
- set HOME=.
- set MSYSTEM=MINGW64
- set PATH=C:/msys64/usr/bin;C:/msys64/mingw64/bin;%APPVEYOR_BUILD_FOLDER%/htslib;%PATH%
- "sh -lc \"MSYS2_ARG_CONV_EXCL=* make test-plugins\""