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lock sphinx version in CI due to problem with v3.2.0 (#3332)
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* lock sphinx version due to problem with 3.2.0

the problem was fixed here: sphinx-doc/sphinx#8084
but that is not yet released

* forgot one

* fix bad doc formatting
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greglandrum committed Aug 12, 2020
1 parent 1ae4e61 commit 6cd062a
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Showing 5 changed files with 28 additions and 28 deletions.
2 changes: 1 addition & 1 deletion .azure-pipelines/linux_build.yml
Expand Up @@ -9,7 +9,7 @@ steps:
boost-cpp=$(boost_version) boost=$(boost_version) \
py-boost=$(boost_version) \
numpy matplotlib pillow eigen pandas \
sphinx recommonmark jupyter
sphinx=3.1.2 recommonmark jupyter
conda activate rdkit_build
conda install -c rdkit nox cairo=1.14.6
displayName: Setup build environment
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2 changes: 1 addition & 1 deletion .azure-pipelines/linux_build_py37.yml
Expand Up @@ -9,7 +9,7 @@ steps:
boost-cpp=$(boost_version) boost=$(boost_version) \
py-boost=$(boost_version) libboost=$(boost_version) \
numpy matplotlib pillow eigen pandas \
sphinx recommonmark jupyter
sphinx=3.1.2 recommonmark jupyter
conda activate rdkit_build
conda install -c rdkit nox cairo=1.14.6
displayName: Setup build environment
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2 changes: 1 addition & 1 deletion .azure-pipelines/mac_build.yml
Expand Up @@ -21,7 +21,7 @@ steps:
boost-cpp=$(boost_version) boost=$(boost_version) \
py-boost=$(boost_version) libboost=$(boost_version) \
numpy matplotlib cairo pillow eigen pandas \
sphinx recommonmark jupyter
sphinx=3.1.2 recommonmark jupyter
displayName: Setup build environment
- bash: |
source ${CONDA}/etc/profile.d/conda.sh
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2 changes: 1 addition & 1 deletion .azure-pipelines/vs_build.yml
Expand Up @@ -8,7 +8,7 @@ steps:
boost-cpp=$(boost_version) boost=$(boost_version) ^
py-boost=$(boost_version) libboost=$(boost_version) ^
numpy matplotlib cairo pillow eigen pandas ^
sphinx recommonmark jupyter
sphinx=3.1.2 recommonmark jupyter
displayName: Install dependencies
- script: |
set Boost_ROOT=
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48 changes: 24 additions & 24 deletions Docs/Book/RDKit_Book.rst
Expand Up @@ -351,33 +351,33 @@ Please ignore those characters.

**Atoms**

========= ========================================= =============== ====== =========
Primitive Property "Default value" Range? Notes
========= ========================================= =============== ====== =========
a "aromatic atom"
A "aliphatic atom"
D "explicit degree" 1 Y
h "number of implicit hs" >0 Y
H "total number of Hs" 1
r "size of smallest SSSR ring" >0 Y
R "number of SSSR rings" >0 Y
v "total valence" 1 Y
x "number of ring bonds" >0 Y
X "total degree" 1 Y
z "number of heteroatom neighbors" >0 Y extension
Z "number of aliphatic heteroatom neighbors" >0 Y extension
========= ========================================== =============== ====== =========
Primitive Property "Default value" Range? Notes
========= ========================================== =============== ====== =========
a "aromatic atom"
A "aliphatic atom"
D "explicit degree" 1 Y
h "number of implicit hs" >0 Y
H "total number of Hs" 1
r "size of smallest SSSR ring" >0 Y
R "number of SSSR rings" >0 Y
v "total valence" 1 Y
x "number of ring bonds" >0 Y
X "total degree" 1 Y
z "number of heteroatom neighbors" >0 Y extension
Z "number of aliphatic heteroatom neighbors" >0 Y extension
\* "any atom"
\+ "positive charge" 1 Y
\+ "positive charge" 1 Y
++ "+2 charge"
\- "negative charge" 1 Y
\- "negative charge" 1 Y
\-- "-2 charge"
^0 "S hybridized" n/a N extension
^1 "SP hybridized" n/a N extension
^2 "SP2 hybridized" n/a N extension
^3 "SP3 hybridized" n/a N extension
^4 "SP3D hybridized" n/a N extension
^5 "SP3D2 hybridized" n/a N extension
========= ========================================= =============== ====== =========
^0 "S hybridized" n/a N extension
^1 "SP hybridized" n/a N extension
^2 "SP2 hybridized" n/a N extension
^3 "SP3 hybridized" n/a N extension
^4 "SP3D hybridized" n/a N extension
^5 "SP3D2 hybridized" n/a N extension
========= ========================================== =============== ====== =========



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