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pr4deepr/README.md

Hi 👋

I am a Research Scientist passionate about image and data analysis in biomedical research.

  • 🔭 Spend a lot of time analysing microscopy images in Python and ImageJ.
  • 🔧 Enjoy developing user-friendly open source tools.
  • 👯 I’m looking to collaborate on bioimage analysis tools and workflows.
  • 🤔 Would love help with identifying tools and methods to analyze multivariate data.
  • 💬 Ask me about image and data analysis in biomedical research.

Publications:

Talks:

Anurag's GitHub stats

Pinned

  1. BioimageAnalysisCoreWEHI/napari_lattice BioimageAnalysisCoreWEHI/napari_lattice Public

    Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

    Jupyter Notebook 11 4

  2. GutAnalysisToolbox GutAnalysisToolbox Public

    Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.

    ImageJ Macro 4 3

  3. cellpose-colab cellpose-colab Public

    Google Colab notebook for Cellpose

    Jupyter Notebook 7 2

  4. imagej_macros imagej_macros Public

    Collection of ImageJ macros

    1 1

  5. visualising_enteric_glia_time_series visualising_enteric_glia_time_series Public

    Using plotly to visualise activation of enteric glial cells (calcium imaging)

    Jupyter Notebook