Bump fastapi from 0.109.0 to 0.110.2 in /backend #683
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| --- | |
| name: Test Backend | |
| on: | |
| push: | |
| branches: [main] | |
| paths: | |
| - "backend/**" | |
| - "!backend/README.md" | |
| - ".github/workflows/test-backend.yaml" | |
| pull_request: | |
| branches: [main] | |
| paths: | |
| - "backend/**" | |
| - "!backend/README.md" | |
| - ".github/workflows/test-backend.yaml" | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Test Code | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| # Step into backend | |
| working-directory: ./backend | |
| # Service containers to run with `container-job` | |
| services: | |
| postgres: | |
| image: postgres:14-alpine | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: admin | |
| POSTGRES_PASSWORD: admin | |
| POSTGRES_DB: aof | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - name: Start keycloak service | |
| # Cannot use the services section because need to access the workspace | |
| # to load the realm configuration. | |
| run: | | |
| docker run -d --name keycloak \ | |
| -p 8080:8080 -p 9990:9990 \ | |
| -v ${{ github.workspace }}/backend/keycloak:/tmp/io \ | |
| --network ${{ job.container.network }} \ | |
| -e DB_VENDOR=h2 \ | |
| -e KEYCLOAK_USER=admin \ | |
| -e KEYCLOAK_PASSWORD=admin \ | |
| -e KEYCLOAK_STATISTICS=all \ | |
| -e KEYCLOAK_IMPORT=/tmp/io/dev-realm.json \ | |
| quay.io/keycloak/keycloak:15.1.0 | |
| - name: Install poetry | |
| run: pipx install poetry==1.7.1 | |
| - name: Set up python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| cache: poetry | |
| - name: Install dependencies | |
| run: poetry install --no-interaction --no-ansi | |
| - name: Wait for keycloak to report healthy | |
| run: | | |
| until curl -f http://localhost:9990/health; do | |
| echo "Waiting for keycloak to become healthy..." | |
| sleep 5 | |
| done | |
| - name: Run tests | |
| env: | |
| VERSION: test | |
| RELEASE_ID: test | |
| DB_URI: postgresql+asyncpg://admin:admin@localhost/aof | |
| AUDIENCE: alphafold-backend | |
| AUTH_SERVER: http://localhost:8080/auth/realms/dev | |
| run: | | |
| poetry run coverage run --concurrency=thread,greenlet --source=app -m pytest | |
| poetry run coverage report -m | |
| poetry run coverage xml | |
| # https://github.com/nedbat/coveragepy/issues/1082 | |
| # pytest-cov doesn't seem to support the `concurrency` flag so | |
| # using coverage commands | |
| - name: Stop keycloak service | |
| run: docker stop keycloak | |
| - name: Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| # Flag upload to group coverage metrics (e.g. unittests, integration) | |
| flags: backend # optional |