An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
An overview of the core repositories in the project, along with the current status of automated testing, can be found here.
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion