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perf(decode): optimize Vec alloc/resize #179

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AaronO
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@AaronO AaronO commented Mar 6, 2022

Avoid calloc overhead of initializing buffer we'll write into, improving decode_small_input/decode/3 by -33%

Unfortunately requires unsafe Vec::set_len so we can get a mutable ref to the uninit portion of the Vec's buffer

Before

decode_small_input/decode/3
                        time:   [56.722 ns 56.776 ns 56.833 ns]
                        thrpt:  [50.341 MiB/s 50.391 MiB/s 50.439 MiB/s]
Found 18 outliers among 100 measurements (18.00%)
  2 (2.00%) high mild
  16 (16.00%) high severe

After

decode_small_input/decode/3
                        time:   [37.232 ns 38.653 ns 41.313 ns]
                        thrpt:  [69.252 MiB/s 74.017 MiB/s 76.843 MiB/s]
                 change:
                        time:   [-34.739% -33.757% -32.200%] (p = 0.00 < 0.05)
                        thrpt:  [+47.492% +50.959% +53.231%]
                        Performance has improved.
Found 4 outliers among 100 measurements (4.00%)
  4 (4.00%) high severe

Avoid calloc overhead of initializing buffer we'll write into

Unfortunately requires unsafe Vec::set_len so we can get a mutable ref to the uninit portion of the Vec's buffer
@AaronO
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AaronO commented Mar 6, 2022

FYI this also fixes a "bug" in decode_engine where we over alloc the buffer's size:

let mut buffer = Vec::<u8>::with_capacity(input.as_ref().len() * 4 / 3);

This approximately allocates with a ratio of 4/3 instead of 3/4 (without accounting for padding, etc...)

Comment on lines +162 to +165
buffer.reserve(len_estimate);
unsafe {
buffer.set_len(total_len_estimate);
}
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The safety documentation of set_len is pretty clear that this is UB. Namely it states

The elements at old_len..new_len must be initialized.

But total_len_estimate = starting_output_len + len_estimate, which means the last len_estimate elements are not properly initialized.

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@jonasbb It's not UB or unsafe in aggregate since write into that "unintialized" portion of the buffer and then truncate to the true length.

This avoids the overhead of callocing/initializing a buffer that we'll immediately overwrite

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The documentation mentions that as a safety requirement, and this code is not upholding it. Later, the code also creates a reference to this uninitialized memory, which is also not allowed.
Some functions like decode could also panic and unwind before truncate could set the correct length. Now, the drop implementation of Vec might potentially read the uninitialized values.

If you really need uninitialized memory you need to write to it via a pointer and update the length only after writing. Alternatively, using MaybeUninit is an option. If the buffer would be of type Vec<MaybeUninit<u8>>, then I think the set_len would be ok, but it isn't.

@marshallpierce
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Thanks for this work. However, I'm not sure who the target user would be -- if you're ok with unsafe, the forthcoming AVX2 version will surely outperform it, and if you're not, you'd probably want the existing safe version. 🤔 Good catch on the over-allocation, too!

@Nugine
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Nugine commented Jun 25, 2022

Hi. There is another crate base64-simd for performance. It is highly unsafe but much faster than base64 crate.

@marshallpierce
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I have some in progress work to address #182, after which #170 will be addressed.

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4 participants