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Issues list

Gating QC plots no longer implemented in scimap.pp.rescale()
#105 opened Jun 6, 2024 by CameronFRWatson
spatial_lda reproducibility
#102 opened Apr 29, 2024 by batukav
Interpretibility of adata.uns['spatial_interaction']
#88 opened Jan 24, 2024 by Dillon214
1
batch samples analysis
#85 opened Dec 11, 2023 by yas92
3
Napari automatically downsamples image when using sm.pl.gate_finder()
#79 opened Oct 18, 2023 by MargotCh
3
How can I get the test p value of two groups when comparing the distances between two cell types
#75 opened Sep 14, 2023 by sailseem
1
not maching gating area with the image
#73 opened Sep 12, 2023 by Elena983
1
Can I gate .qptiff image?
#72 opened Sep 3, 2023 by xyin0918
1
spatial_lda and recurrent cellular neighborhoods
#71 opened Aug 30, 2023 by batukav
4
how to export the particular data file about the distance calculation
#70 opened Aug 13, 2023 by sailseem
1
mcmicro_to_scimap add a condition to error out if multiple dim CSV files are provided
#69 opened Aug 2, 2023 by pantsm
scimap installation got error
#64 opened Jun 19, 2023 by bugie19
11
umap plotting bug Something isn't working
#59 opened Jun 8, 2023 by ajitjohnson
Issues with ComBat feature:
#49 opened May 9, 2023 by hegewisch15
1
Visualization of a single category when plotting umap (sm.pl.umap)
#48 opened Apr 27, 2023 by tuuliavallius
Please provide a version cli flag to get package version
#46 opened Mar 29, 2023 by luiskuhn
2
supplying additional groupings
#41 opened Dec 7, 2022 by jamesMo84
2
voronoi diagram supply axis
#39 opened Nov 21, 2022 by jim-bo
is it possible to perform an integrated analysis of separated images?
#36 opened Nov 18, 2022 by bugie19
2
more options in sm.tl.spatial_count return?
#33 opened Jul 29, 2022 by Isaacyz
2
sm.pl.spatial_interaction: len(interaction_map.columns)
#32 opened Jul 28, 2022 by Isaacyz
1
Adjusting colors in scimap UMAP animation
#31 opened Jul 19, 2022 by jnmark
3
scimap to csv bug Something isn't working
#15 opened Jan 27, 2022 by ajitjohnson
better lazy-loading image support in scimap.pl.image_viewer for ome-tiffs enhancement New feature or request
#13 opened Sep 15, 2021 by jmuhlich
@jmuhlich
1
Add capability to specify imageid for adding ROIs from omero
#11 opened Aug 10, 2021 by ajitjohnson
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