Useful R functions for Multi-omics analyses
View the BinfTools Vignette.
For more detailed information about all of the functions, see the BinfTools Wiki
#Bioconductor packages don't install automatically on BinfTools install
BiocManager::install("SAGx") #This package isn't available for the latest version of R. It has been removed as a dependency
BiocManager::install("GSVA")
BiocManager::install("fgsea")
BiocManager::install("gage")
devtools::install_github("kevincjnixon/gpGeneSets") # gprofiler genesets for mouse, human, and drosophila
devtools::install_github("kevincjnixon/BinfTools", build_vignettes=T) #This will take some time to build the vignette
Load the libraries
library(gpGeneSets)
library(BinfTools)
vignette("BinfTools") #Quick getting started vignette