Install Anaconda or Miniconda. Create and activate an environment called top_bottom_moseq with python=3.7:
conda create -n top_bottom_moseq python=3.7
conda activate top_bottom_moseq
Install opencv and jax
conda install -c conda-forge opencv
pip install --upgrade "jax[cuda]==0.3.21" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
Clone or download top-bottom-moseq and pip install:
git clone https://github.com/calebweinreb/top-bottom-moseq.git
pip install -e top-bottom-moseq
Clone or download keypointMoseq and pip install:
git clone https://github.com/calebweinreb/keypointMoSeq.git
pip install -e keypoint_moseq
Make the new environment accessible in jupyter
python -m ipykernel install --user --name=top_bottom_moseq