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Flatiron Institute

Popular repositories

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 606 356

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 279 69

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 249 70

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 247 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 132 84

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 100 17

Repositories

Showing 10 of 167 repositories
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    Python 71 Apache-2.0 2 5 0 Updated May 17, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    Python 30 MIT 4 61 1 Updated May 17, 2024
  • flathub Public

    A simple elasticsearch frontend for serving astrophysical simulation catalog data

    Haskell 9 Apache-2.0 5 14 0 Updated May 17, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    Python 7 Apache-2.0 0 2 0 Updated May 17, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    Python 0 0 0 0 Updated May 17, 2024
  • polymathic_viz Public

    Tools for creating visualizations that are useful for the polymathic project.

    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated May 17, 2024
  • sciware Public

    Learning materials for scientific software development

    HTML 69 34 2 0 Updated May 17, 2024
  • stan-playground Public

    Run Stan models in the browser

    TypeScript 2 Apache-2.0 0 9 2 Updated May 17, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    TypeScript 35 Apache-2.0 4 39 1 Updated May 17, 2024
  • comptools24 Public

    Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.

    TeX 2 Apache-2.0 1 0 0 Updated May 17, 2024
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