Skip to content
@dmis-lab

DMIS Laboratory - Korea University

Data Mining & Information Systems Laboratory @ Korea University

Pinned

  1. biobert biobert Public

    Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

    Python 1.9k 443

  2. bern bern Public

    A neural named entity recognition and multi-type normalization tool for biomedical text mining

    Python 168 43

  3. BioSyn BioSyn Public

    ACL'2020: Biomedical Entity Representations with Synonym Marginalization

    Python 157 26

  4. hats hats Public

    HATS: A Hierarchical Graph Attention Network for Stock Movement Prediction

    Python 142 62

  5. biobert-pytorch biobert-pytorch Public

    PyTorch Implementation of BioBERT

    Java 289 100

  6. BERN2 BERN2 Public

    BERN2: an advanced neural biomedical namedentity recognition and normalization tool

    Python 163 38

Repositories

Showing 10 of 47 repositories
  • OLAPH Public

    OLAPH: Improving Factuality in Biomedical Long-form Question Answering

    Python 22 0 0 0 Updated May 26, 2024
  • LAPIS Public
    Python 0 0 0 1 Updated May 20, 2024
  • ParaCLIP Public

    Fine-tuning CLIP Text Encoders with Two-step Paraphrasing (EACL 2024, Findings)

    Python 1 0 0 0 Updated Apr 22, 2024
  • self-biorag Public

    ISMB/ECCB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"

    Python 17 0 0 0 Updated Apr 4, 2024
  • BERN2 Public

    BERN2: an advanced neural biomedical namedentity recognition and normalization tool

    Python 163 BSD-2-Clause 38 9 0 Updated Mar 28, 2024
  • MolPLA Public
    Python 3 0 0 0 Updated Mar 13, 2024
  • BADGER Public
    Python 0 0 0 0 Updated Feb 19, 2024
  • MulinforCPI Public

    MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integration

    Python 8 2 0 0 Updated Jan 23, 2024
  • ReSimNet Public

    Implementation of ReSimNet for drug response similarity prediction

    Jupyter Notebook 36 Apache-2.0 16 1 0 Updated Dec 20, 2023
  • PerceiverCPI Public

    Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction

    Python 33 MIT 6 0 0 Updated Nov 9, 2023