Migration data export

This is a source repository for docker image to run all data export tasks of dictybase overhaul project.

Exporting data

docker build --rm dictybase/migration-data-export .

For MacOSX with M1 chip system add the platform argument.

docker build --rm --platform linux/amd64 dictybase/migration-data-export .

docker-compose -f dsc.yml up

It should take around few hours to complete. The script generally stay in the terminal even after it got finished. So, close it by pressing Ctrl+c.

make create-tarball

Will export data from containers to a folder named data in the current directory.

docker run --rm dictybase/migration-data-export -h

It will print out all the available scripts.

Name		Name	Last commit message	Last commit date
Latest commit History 51 Commits
docker-copy		docker-copy
ora2arango		ora2arango
.gitignore		.gitignore
.opencommitignore		.opencommitignore
Dockerfile		Dockerfile
Makefile		Makefile
README.md		README.md
colleagues.go		colleagues.go
commands.go		commands.go
common.env		common.env
config.go		config.go
dsc.yml		dsc.yml
export.go		export.go
genome_annotations.yml		genome_annotations.yml
genomes.yml		genomes.yml
genomes_extra.yml		genomes_extra.yml
genomes_patch.yml		genomes_patch.yml
go.mod		go.mod
go.sum		go.sum
literature.yml		literature.yml
logger.go		logger.go
oci8.pc		oci8.pc
stockcenter.go		stockcenter.go
utils.go		utils.go