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Add precommit #2790

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merged 7 commits into from
Dec 15, 2021
Merged

Add precommit #2790

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23baf9c
Add precommit config
SauravMaheshkar Dec 11, 2021
17a4565
Add pre-commit to environments
SauravMaheshkar Dec 11, 2021
5ea8484
change yapf version to v0.22.0
Dec 14, 2021
996d526
Remove pytest from pre-commit
Dec 14, 2021
51534d3
remove pre-commit from env files apart from common
SauravMaheshkar Dec 14, 2021
a2424d9
Add documentation for pre-commit
SauravMaheshkar Dec 14, 2021
1f43aa0
Update pre-commit documentation
SauravMaheshkar Dec 14, 2021
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35 changes: 35 additions & 0 deletions .pre-commit-config.yaml
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@@ -0,0 +1,35 @@
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v3.4.0
hooks:
- id: check-merge-conflict
- id: trailing-whitespace
- id: end-of-file-fixer
- id: check-yaml

- repo: https://github.com/pre-commit/mirrors-yapf
rev: v0.31.0
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hooks:
- id: yapf

- repo: https://gitlab.com/PyCQA/flake8
rev: 3.8.4
hooks:
- id: flake8
args: [--count]

- repo: local
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hooks:
- id: pytest-check
name: pytest-check
types: [python]
entry: pytest -v -m 'slow'
language: system
pass_filenames: false
always_run: true

- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v0.790
hooks:
- id: mypy
args: [--ignore-missing-imports]
1 change: 1 addition & 0 deletions env.common.yml
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Expand Up @@ -8,6 +8,7 @@ dependencies:
- rdkit
- mdtraj
- numpy==1.19.*
- pre-commit
- pip==20.2.*
- pip:
- biopython
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1 change: 1 addition & 0 deletions env.cpu.mac.yml
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Expand Up @@ -3,6 +3,7 @@ dependencies:
- -f https://pytorch-geometric.com/whl/torch-1.8.1.html
- -f https://pytorch-geometric.com/whl/torch-1.8.0+cpu.html
- dgl==0.6.*
- pre-commit
- torch==1.8.1
- torchvision==0.9.1
- torch-scatter==2.0.8
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1 change: 1 addition & 0 deletions env.cpu.yml
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Expand Up @@ -3,6 +3,7 @@ dependencies:
- -f https://download.pytorch.org/whl/torch_stable.html
- -f https://pytorch-geometric.com/whl/torch-1.8.0+cpu.html
- dgl==0.6.*
- pre-commit
- torch==1.8.1+cpu
- torchvision==0.9.1+cpu
- torch-scatter==2.0.8
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1 change: 1 addition & 0 deletions env.gpu.yml
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Expand Up @@ -3,6 +3,7 @@ dependencies:
- -f https://download.pytorch.org/whl/torch_stable.html
- -f https://pytorch-geometric.com/whl/torch-1.8.1+cu111.html
- dgl-cu110==0.6.*
- pre-commit
- torch==1.8.1+cu111
- torchvision==0.9.1+cu111
- torch-scatter==2.0.8
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1 change: 1 addition & 0 deletions env.test.yml
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Expand Up @@ -3,6 +3,7 @@ dependencies:
- flake8
- flaky
- mypy
- pre-commit
- pytest
- pytest-cov
- types-setuptools
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