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lsgmake-gap is a utility to aid in the parallelization of the Illumina Genome Analyzer Pipeline on Platform LSF clusters

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lsgmake-gap

lsgmake-gap is a utility to aid in the parallelization of the Illumina Genome Analyzer Pipeline on Platform LSF clusters.

lsgmake-gap is distributed under the GNU General Public License version 3. See the file COPYING for details.

See the NEWS files for changes from the previous version.

Installation

To install it, just put it in your path. For example:

$ sudo install lsgmake-gap.rb /usr/local/bin/lsgmake-gap

If you wish to install retry, a script that automatically retries failed commands, run:

$ sudo install retry.sh /usr/local/bin/retry

To use retry, use the --make option for lsgmake-gap:

$ lsgmake-gap --make "retry 2 make" ...

Documentation

You can find the documentation in HTML format in the doc directory. You can regenerate the documentation with the following command:

$ rdoc --op doc lsgmake-gap.rb

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lsgmake-gap is a utility to aid in the parallelization of the Illumina Genome Analyzer Pipeline on Platform LSF clusters

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