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add flake8 linting to Makefile and github actions #1399

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Related to #1195

I saw #1195 and since I have experience with flake8 I decided to contribute.

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The new flake8 step fails the pipeline because we need to agree on how to tune it:

  1. turn off the currently failing flake8 codes
  2. go ahead and fix each failing code

I'm happy to do either, but @defnull could you opine what you'd like flake8 to do?

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