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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

Pinned

  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 86 19

  2. blotter blotter Public

    bedford lab research

    HTML 66 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 21

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 11 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 96 repositories
  • blotter Public

    bedford lab research

    HTML 66 93 3 0 Updated May 10, 2024
  • ncov-forecasting-fit Public

    Assessing accuracy of fitness model forecasts

    Jupyter Notebook 1 1 6 0 Updated May 9, 2024
  • evofr Public

    Tools for evolutionary forecasting

    Jupyter Notebook 2 AGPL-3.0 0 2 0 Updated May 6, 2024
  • cartography Public

    Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

    HTML 3 MIT 1 3 0 Updated May 3, 2024
  • pathogen-embed Public

    Create reduced dimension embeddings for pathogen sequences

    Python 0 MIT 0 3 1 Updated Apr 26, 2024
  • phylo-kernel-public Public

    Code and data for: "Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences".

    R 0 0 0 0 Updated Apr 25, 2024
  • sars2-within-host-selection Public

    Correlating within-host and between-host fitness in SARS-CoV-2

    Shell 1 0 0 0 Updated Apr 19, 2024
  • ncov-orf8 Public

    Positive selection for ORF8 knockout in SARS-CoV-2

    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 22, 2024
  • flu-forecasting Public

    Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

    Jupyter Notebook 4 MIT 1 0 0 Updated Mar 20, 2024
  • welsh-escape-scores Public

    Analysis of predictive value of escape scores from Welsh et al. 2023 experimental data

    Python 0 MIT 0 0 0 Updated Mar 13, 2024
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