DTU Biosustain
Popular repositories
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croissance
croissance PublicTool for estimating growth rates from microbial growth curves
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snakemake_UmetaFlow
snakemake_UmetaFlow PublicUntargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
Repositories
- pseudobatch Public
The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor.
- Growth-coupling-suite Public
A constraint-based metabolic model-based workflow for computing and analyzing microbial strain design which couple a target reaction to growth
- incawrapper Public
A python wrapper for Metabolic Flux Analysis (MFA) using INCA with additional functionalities
- msdap Public Forked from ftwkoopmans/msdap
MS-DAP: downstream analysis pipeline for quantitative proteomics
- bayesian_statistics_for_computational_biology Public
A Bayesian statistics course for computational biologists
- GEM-Exometabolome Public
Pipeline for the integration of exometabolomic data into GEM analysis and interpretation
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- pankb Public
The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for six major biotech bacteria families.
- consortia_synthetic_anaerobe Public
Supporting material for "CRISPRi-mediated metabolic switch enables concurrent aerobic and synthetic anaerobic fermentations in engineered consortium" manuscript
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