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from Bio.SeqUtils import gc_fraction
gr_fraction("GGAUCUUCGGAUCU")
# expected result: 0.5
Actual behaviour
from Bio.SeqUtils import gc_fraction
gr_fraction("GGAUCUUCGGAUCU")
# result: 0.7777777777777779
What to fix
Please add U to the non-ambiguous nucleotides to support RNA sequences (currently, the non-ambiguous nucleotides are ATCGSW). The previous GC content function (now deprecated) was supporting RNA sequences too
The text was updated successfully, but these errors were encountered:
Setup
I am reporting a problem with:
Expected behaviour
Actual behaviour
What to fix
Please add U to the non-ambiguous nucleotides to support RNA sequences (currently, the non-ambiguous nucleotides are ATCGSW). The previous GC content function (now deprecated) was supporting RNA sequences too
The text was updated successfully, but these errors were encountered: