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Issues list

replicate [Data] columns reimplemented like Katharoseq
#206 opened May 23, 2024 by charles-cowart
@charles-cowart
migrate post-metapool validation into metapool
#205 opened May 20, 2024 by charles-cowart
@charles-cowart
update seqpro
#204 opened May 8, 2024 by charles-cowart
@charles-cowart
[Bioinformatics] section validation
#203 opened May 8, 2024 by charles-cowart
@charles-cowart
update examples to current katharo naming scheme.
#197 opened Apr 17, 2024 by charles-cowart
@charles-cowart
Add support for an optional file containing sequence counts.
#195 opened Apr 16, 2024 by charles-cowart
@charles-cowart
remove manual creation of sample-sheet objects
#194 opened Apr 15, 2024 by charles-cowart
@charles-cowart
3
overlapping BLANK naming when dealing with multiple projects
#190 opened Mar 21, 2024 by cbrenchy
1
validate_plate_df function should allow for arguments specifying sample_name column in metadata
#189 opened Mar 19, 2024 by maddyambre
Ensure TRUE/FALSE is caught when validating sample-sheets.
#188 opened Mar 19, 2024 by charles-cowart
@charles-cowart
replace generic 'this doesn't appear to be a valid sample-sheet' error.
#187 opened Mar 12, 2024 by charles-cowart
@charles-cowart
Adjust error message for missing SheetType and SheetVersion parameters
#184 opened Feb 28, 2024 by charles-cowart
@charles-cowart
'NovaSeq X' and 'NovaSeq X Plus' need to be added to list of sequencers with Forward i5 index direction (OTHER_SEQUENCERS)
#176 opened Jan 30, 2024 by RodolfoSalido
1
Add matrix tube sample accession support for amplicon notebooks.
#169 opened Dec 21, 2023 by RodolfoSalido
2
multiple project iSeq readcount merge
#168 opened Dec 21, 2023 by RodolfoSalido
2
Generate Qiita prep seems to be 16S or other
#112 opened Mar 29, 2023 by wasade
4
read_plate_map_csv should assert required columns are present
#110 opened Mar 29, 2023 by wasade
read_plate_map_csv edgecase: numeric samples will be read as numbers
#108 opened Mar 29, 2023 by wasade
@charles-cowart
1
Create a generalized 'check_against_Qiita' function
#81 opened Aug 4, 2022 by charles-cowart
Fail validation when sample-sheet contains duplicate entries in [Bioinformatics]
#80 opened Jul 13, 2022 by charles-cowart
@charles-cowart
Required columns, prep_columns ideally would come from Qiita
#77 opened May 18, 2022 by charles-cowart
@charles-cowart
Potential divide/0 errors in calculate_norm_vol()
#76 opened May 18, 2022 by charles-cowart
@charles-cowart
1
Update README.md
#74 opened May 10, 2022 by charles-cowart
WarningMessages and quiet_validate_and_scrub_sample_sheet()
#68 opened Mar 11, 2022 by charles-cowart
@charles-cowart
Confirm/Verify that the notebooks requiere center_name and experiment_design_description urgent-need
#64 opened Jan 25, 2022 by antgonza
1
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