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BEP032: ephys -> {icephys, ecephys} #1806

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merged 4 commits into from
Jun 5, 2024

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yarikoptic
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@yarikoptic yarikoptic commented Apr 25, 2024

Implements

Didn't want to push to bep032 since not yet agreed upon by @bids-standard/bep032 but wanted to be ready when/if we decide to proceed.

Closes #1800

@TheChymera
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Looks good to me.

TheChymera
TheChymera previously approved these changes Apr 29, 2024
@TheChymera
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Pending of course potential updates from the discussion.

@effigies
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@yarikoptic Do you intend to fix this up according to #1800 (comment) or should we close this?

@effigies effigies dismissed TheChymera’s stale review May 20, 2024 18:31

Consensus has changed

@yarikoptic
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let me fix it up to reflect #1800 ... will do now

@yarikoptic yarikoptic changed the title BEP032: ephys -> cephys BEP032: ephys -> {icephys, ecephys} May 20, 2024
…lectrode Electrophysiology

bids-standard#1800 (comment)

Consensus reached during working group meeting on 2024-05-15:

- modality = "Microelectrode Electrophysiology"
- datatypes = "icephys" and "ecephys"
- suffixes = "_icephys" and "_ecephys"
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microelectrodes -> microelectrode

@yarikoptic
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microelectrodes -> microelectrode

I might actually keep it plural and then make "cells" for intracel as well since there could be multiple electrodes/cells. Or why do you think it should become singular?

@yarikoptic
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I would also ask everyone to suggest using github suggestions mechanism, see e.g https://stackoverflow.com/questions/54239733/how-can-i-manually-add-suggestions-in-code-reviews-on-github on howto. Can even span multiple lines

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VisLab commented Jun 3, 2024

It was grammar - "Electrophysiological data from an extracellular microelectrodes" -- the an is problematic if plural.

@yarikoptic
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It was grammar - "Electrophysiological data from an extracellular microelectrodes" -- the an is problematic if plural.

ah, indeed! codespell guru fell into a trap ;-)
I made two suggestions, see if I didn't screw up more: https://github.com/bids-standard/bids-specification/pull/1806/files#r1625124867

@yarikoptic
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FWIW -- pre-commit and check_links whining are not on changes in this PR

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ok, thanks everyone who participated -- let's proceed by merging into bep032 branch to avoid possible conflicts with other works. I will squash

@yarikoptic yarikoptic merged commit a46e439 into bids-standard:bep032 Jun 5, 2024
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5 participants