Automated Latest Dependency Updates

[github-actions]

This is an auto-generated PR with dependency updates. Please do not delete the dep-update branch because it's needed by the auto-dependency bot.

[codecov]

Codecov Report

Merging #1530 (f6e2225) into main (70226e1) will decrease coverage by 8.5%.
The diff coverage is n/a.

@@           Coverage Diff            @@
##             main   #1530     +/-   ##
========================================
- Coverage   100.0%   91.6%   -8.4%     
========================================
  Files         230     230             
  Lines       15824   15824             
========================================
- Hits        15816   14479   -1337     
- Misses          8    1345   +1337     

Impacted Files	Coverage Δ
...alml/tests/component_tests/test_lgbm_classifier.py	5.0% <0.0%> (-95.0%)	⬇️
...valml/tests/component_tests/test_target_encoder.py	8.6% <0.0%> (-91.4%)	⬇️
evalml/automl/pipeline_search_plots.py	14.6% <0.0%> (-85.4%)	⬇️
...ml/tests/component_tests/test_xgboost_regressor.py	16.0% <0.0%> (-84.0%)	⬇️
...l/tests/component_tests/test_xgboost_classifier.py	16.4% <0.0%> (-83.6%)	⬇️
...l/tests/component_tests/test_catboost_regressor.py	19.4% <0.0%> (-80.6%)	⬇️
.../tests/component_tests/test_catboost_classifier.py	19.4% <0.0%> (-80.6%)	⬇️
...l/tests/automl_tests/test_pipeline_search_plots.py	25.6% <0.0%> (-74.4%)	⬇️
evalml/tests/pipeline_tests/test_graphs.py	38.7% <0.0%> (-61.3%)	⬇️
...ents/estimators/classifiers/catboost_classifier.py	50.0% <0.0%> (-50.0%)	⬇️
... and 18 more

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[angela97lin]

Odd, could be related to XGBoost package update? Just realized that this started happening on all PRs

[dsherry]

This is weird!

Observations

• PR is updating both plotly and xgboost version
• Windows unit tests pass
• Linux "minimum deps" tests pass
• Linux full deps test pass with cryptic worker crash (probably masking the real error)
• Build docs job fails with cryptic build error: "Inconsistency detected by ld.so: dl-version.c: 205: _dl_check_map_versions: Assertion `needed != NULL' failed!"

I have a sneaking suspicion this is related to the fix I merged for shap recently, #1490. That PR makes it so we're installing numba (a dependency for new numpy version) via conda instead of pip. I wonder if the xgboost update is interacting with this somehow on linux. My hunch is that xgboost is the culprit and not plotly but I could be wrong, needs confirmation.

Things to try next

• ASAP: merge a PR where we cap the plotly/xgboost versions, to unblock other PRs (I've got this, Set max value for plotly and xgboost versions #1532)
• Get a version of this PR up where we only pin xgboost and update the plotly version, and see if we can merge that. (Or vice versa)
• Look into the xgboost and plotly changelogs and see if there are any clues there
• Try to ssh into circleci box and rerun the test job without multiple workers, perhaps that unmasks the actual error message
• Look at the output of pip freeze on the circleci box
• Try to repro the linux test failure locally
• If we can't find a fix this week, we can always put a max value on the xgboost version, file a future issue and close this PR.

[dsherry]

I just merged #1532 to cap the versions, so closing this. But @bchen1116 has said he'll take a look! :)

[hcho3]

@dsherry @bchen1116 Hello, XGBoost dev here. The Python wheel for XGBoost 1.3.0 had a critical bug that rendered it unusable on CentOS and Debian platforms. I submitted dmlc/xgboost#6482 to fix the bug. Once dmlc/xgboost#6482 is approved and merged, we will release 1.3.0.post0 version to PyPI.

[bchen1116]

@hcho3 Thanks so much for the update!