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Connects to #306. PreCAWG data download. #339

Merged
merged 63 commits into from
May 9, 2024
Merged

Connects to #306. PreCAWG data download. #339

merged 63 commits into from
May 9, 2024

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jimmyzhen
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Key Changes:

  • A new entry page for data download in which leads users to the selective data file browser while also presents all the available bundled datasets
  • A modified selective data file browser that displays either pass1b-06, pass1a-06, or human-precovid-sed-adu data files in a table with respective tissue and assay filters
  • A re-organized multi-omics working group resource page (with a tab UI) including the entirety of the human-precovid-sed-adu data freeze release notes
  • An updated/simplified branding text in the above-the-fold view on the homepage

@jimmyzhen
Remove endurance training and acute exercise intervention filters due…
6067577 
… to the use of tab UIs to separate different study datasets

Also render tissue/assay/omics filters using phase/study specific tissue/assay/omics lists
@jimmyzhen
New component to render list of bundle datasets
45b95f0
@jimmyzhen
New component to render list of selective download cards for differen…
89c99fa 
…t study data (e.g. pass1b-06, pass1a-06)
@jimmyzhen
New component to render individual tab in selective data download fil…
f267475 
…e browser
@jimmyzhen
Nw wrapper component for selective file download filters and data table
69aaa63
@jimmyzhen
New wrapper component for selective file downloads with tab Uis
c426967
@jimmyzhen
New parent component for refactored data downloads page
28a2c33
@jimmyzhen
Expanded a single assay list to multiple lists unique to the 3 study …
235e044 
…datasets
@jimmyzhen
Expanded single tissue and omic lists to multiple lists unique to the…
d6cd3f0 
… 3 study datasets
@jimmyzhen
Added actions, states and reducer cases to support updated data downl…
c8fde5a 
…oad page UIs
@jimmyzhen
Expanded bundled datasets support pass1a-06 and human-precovid-sed-adu
413ebd5
@jimmyzhen
Updated bundled data download button appearance due to Ui changes
08ef8a9
@jimmyzhen
Transformed human tissue names to super class names
c38c6cf
@jimmyzhen
Added styles for new data download page Uis
38b641e
@jimmyzhen
Restructured components due to data download page UI changes
9f2d6a6
@jimmyzhen
Added new route for data download file browser
fc3b597
@jimmyzhen
Update appearances of bundled data download button's various states
d537421
@jimmyzhen
Added bundled data download metadata for pass1a-06 and human-precovid…
c4df3a7 
…-sed-adu
@jimmyzhen
Updated unit test assertion
58eb51f
@jimmyzhen
Pin 'tocbot' dependency version
3c4fe0c
@jimmyzhen
Remove phenotype/resutls/analysis filters for human-precovid-sed-adu …
35afc7c 
…data download for now
@jimmyzhen
Restrict the display of additional consortium data info to internal u…
db69b61 
…sers
@jimmyzhen
Direct users to the online contact form instead of sending emails for…
77affee 
… data requests
@jimmyzhen
Remove unneeded func prop being passed to child component
ace16e0
@jimmyzhen
Update page overview description and data select card body content
90c162e
@jimmyzhen
Add left/right padding to modal buttons
13b9f72
@jimmyzhen
Replace pass-down function prop with react-redux hooks for invoking s…
b75910a 
…urvery modal
@jimmyzhen
Add left/right padding to modal button
45e422d
@jimmyzhen
Add page title
e228527
@jimmyzhen
Move BicUpdates/PreCAWG/DAWG-PAC sections to external components; add…
1bdea5a 
… tabs to organize PreCAWG/DAWG-PAC content
@jimmyzhen
Correct human tissue groupings
af8a07a
@jimmyzhen
Transform assay value consisting of multiple metabolomics targeted as…
d8b4fa0 
…says
@jimmyzhen
Correct human tissue grouping filter
77d3b35
@jimmyzhen
Include analysis and results filters for precawg data
c5e5ca7
@jimmyzhen
Track DEA search result filtering events in GA4
cbf2e0b
@jimmyzhen
Track DEA keyword search events in GA4
90d5202
@jimmyzhen
Track gene-centric view keyword search events in GA4
55fb6d0
@jimmyzhen
Correct GA4 event tracking category
e3ee5c8
@jimmyzhen
Track multi-omics working groups html report download events in GA4
643421f
@jimmyzhen
Refactor and move user survey modal invocation to parent component
1fb2e6d
@jimmyzhen
Pass user survey modal props to child bundle datasets component
0a69b2f
@jimmyzhen
Pass user survey modal state as props to main data download component
f211eb9
@jimmyzhen
Simplify useEffect hook setup
f11a1b1
@jimmyzhen
Simplify to use single modal component to handle download request
0bdbe82
@jimmyzhen
Simplify to use single 'SelectiveDataDownloadFileBrowser' component t…
1e62ce2 
…o render file download table; remove tab UI
@jimmyzhen
Move page summary text to parent component
1907722
@jimmyzhen
Refactor to use single modal component to handle both authenticated a…
454fdd8 
…nd anonymous users
@jimmyzhen
Add style for link back to data download main page
1d2d59f
@jimmyzhen
Reset data filters when user navigates back to data download main page
eb232ff
@jimmyzhen
Add extra condition to set email and name values
1e439a3
@jimmyzhen
Merge branch 'dev' of github.com:MoTrPAC/motrpac-frontend into 306_JZ…
f8083d7 
…_PreCAWG_Data_Download
@jimmyzhen
Update test assertion
6369c21
@jimmyzhen
Reinstall npm dependencies
ebbe509
@jimmyzhen
Update hero section text
9d3519a
@jimmyzhen
Add minor style improvement to link back to data download main page
34afb29
@jimmyzhen
Move Data Types description box toward the top of the page and update…
5094012 
… the description text in Learn More box
@jimmyzhen jimmyzhen linked an issue May 9, 2024 that may be closed by this pull request
Available pre-covid sedentary adult data download #306
Closed
@jimmyzhen jimmyzhen merged commit 6998067 into dev May 9, 2024
6 checks passed
@jimmyzhen jimmyzhen mentioned this pull request May 21, 2024
Closed
@jimmyzhen jimmyzhen deleted the 306_JZ_PreCAWG_Data_Download branch May 30, 2024 21:08
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Available pre-covid sedentary adult data download
1 participant
@jimmyzhen