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Assembles a genome and finds true mutations among sequencing errors

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MislavJaksic/Bioinformatics-Finding-Mutations

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Sequencing DNA image

Mutation Finder

Assembles a genome and finds true mutations among sequencing errors.

Installation and running

  • Download and install Bio-Linux, a specialised Ubuntu workstation (Optional)
  • Download the Mutation Finder project
  • Compile the project: with an IDE or a makefile (TODO)
  • Adjust the settings in the settings.ini file to your liking
  • Place the settings.ini file and input files into the same folder
  • Run the program with: "./MutationFinder"

Folders

Folder Contents
Docs: Project documentation
Instructions: Faculty provided instructions
MutationFinder: Project folder
Research: Research notes
Results: Output files, mutation CSV files
TestData: Faculty provided test data

Authors

Josip Kasap
Mislav Jaksic

University, faculty and course

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Assembles a genome and finds true mutations among sequencing errors

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