Popular repositories

1. Beta-Xi-Sim Beta-Xi-Sim Public

   A simulator for ancestries of multiple unlinked loci driven by Beta-Xi-coalescents with exponential population growth.

   C++ 2 1

2. tree-zig-zag tree-zig-zag Public

   Zig-zag and Metropolis-Hastings samplers for the Kingman coalescent under finite or infinite sites mutation, along with a hybrid sampler combining both zig-zag and Metropolis-Hastings dynamics.

   C++ 2 1

3. discsim discsim Public

   Forked from jeromekelleher/discsim

   Efficient coalescent simulations in a spatial continuum

   C

4. msprime msprime Public

   Forked from tskit-dev/msprime

   A reimplementation of Hudson's classical ms simulator for modern data sets.

   Python

5. seedbank-infer seedbank-infer Public

   This repository holds the code used to conduct a simulation study of the identifiability of various seed bank models in population genetics. A preprint with details is forthcoming.

   C++

6. msprime-1.0-paper msprime-1.0-paper Public

   Forked from tskit-dev/msprime-1.0-paper

   Publication describing msprime 1.0

   TeX