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Releases: InstituteforDiseaseModeling/idmtools

v1.0.10

04 Apr 22:46
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What's Changed

  • Fix pygit2 by @shchen-idmod in #2158
  • Assetization workflow for generating SIF image should track using Asset ID instead of AC ID by @shchen-idmod
    #2032
  • Remove local platform from idmtools repo by @shchen-idmod in #2160
  • Improved Simulation builders (fixed several issues) by @ZDu-IDM in #2184
  • Refactor idmtools Simulation Builders structure. by @ZDu-IDM in #2203
  • Refactor Simulation Builders to remove duplicated code by @ZDu-IDM in #2196
  • Combine two add sweeping functions into one @ZDu-IDM in #2195
  • Sweeping function allow parameters with default values @ZDu-IDM #2194
  • Builder function add_multiple_parameter_sweep_definition doesn't support function with single dictionary parameter @ZDu-IDM #2192
  • SimulationBuilder assume input values object has len defined @ZDu-IDM #2183
  • Refactor ArmSimulationBuilder and move general functionality to a base class @ZDu-IDM #2168
  • ArmSimulationBuilder needs rasie exception for call to add_sweep_definition and add_multiple_parameter_sweep_definition @ZDu-IDM #2167
  • SweepArm should support add_multiple_parameter_sweep_definition @ZDu-IDM #2166
  • ArmSimulationBuilder display simulation count incorrect @ZDu-IDM #2165
  • Give deprecating warning for duplicate wait_on_done function by @shchen-idmod in #2173
  • Fix circular dependency for core and cli tests and move comps related test in core to comps test by @shchen-idmod in #2175
  • Add download asset and use asset id in generate singularity builder instead of assetcollection by @shchen-idmod in #2210
  • Fix bug for save_as for content type and add unittest by @shchen-idmod in #2213
  • Update idmtools to work with python 3.12 by @shchen-idmod in #2215
  • unregister plugin in test_hooks.py to avoid affecting other test in p… by @shchen-idmod in #2226
  • Update idm-buildtools requirement from ~=1.0.3 to ~=1.0.5 by @dependabot in #2227
  • Update junitparser requirement from ~=3.1.1 to ~=3.1.2 by @dependabot in #2228
  • Update coverage requirement from <6.6,>=5.3 to >=5.3,<7.5 by @dependabot in #2229
  • Update flake8 requirement from ~=6.0.0 to ~=7.0.0 by @dependabot in #2230
  • Update pytest-xdist requirement from ~=3.3 to ~=3.5 by @dependabot in #2231
  • fix hook run with serial mark by @shchen-idmod in #2235
  • Update docker requirement from <6.1.0,>=4.3.1 to >=4.3.1,<7.1.0 by @dependabot in #2177
  • Update junitparser requirement from ~=2.8.0 to ~=3.1.1 by @dependabot in #2178
  • Update jinja2 requirement from ~=3.1.2 to ~=3.1.3 by @dependabot in #2176
  • Update packaging requirement from <22.0,>=20.4 to >=20.4,<24.0 by @dependabot in #2181
  • Update readthedocs-sphinx-search requirement from ~=0.3.1 to ~=0.3.2 by @dependabot in #2182
  • Update click requirement from ~=8.1.3 to ~=8.1.7 by @dependabot in #2180
  • Update pytest requirement from ~=7.2.0 to ~=8.0.0 by @dependabot in #2179
  • Revert "Update pytest requirement from ~=7.2.0 to ~=8.0.0" by @shchen-idmod in #2185
  • Update pytest-timeout requirement from ~=2.1.0 to ~=2.3.1 by @dependabot in #2204
  • Update cookiecutter requirement from ~=2.1.1 to ~=2.6.0 by @dependabot in #2199
  • Update jupyterlab requirement from ~=4.0.2 to ~=4.1.5 by @dependabot in #2212
  • update examples for platform from Belegost to CALCULON by @shchen-idmod in #2225
  • Update nbsphinx requirement from ~=0.9.2 to ~=0.9.3 by @dependabot in #2221
  • Update pygithub requirement from ~=1.57 to ~=2.3 by @dependabot in #2223
  • Update packaging requirement from ~=23.2 to ~=24.0 by @dependabot in #2222
  • Update pluggy requirement from ~=1.2 to ~=1.4 by @dependabot in #2220
  • Update yaspin requirement from <2.4.0,>=1.2.0 to >=1.2.0,<3.1.0 by @dependabot in #2189
    Full Changelog: v1.7.9...v1.7.10

v1.7.9

12 Jan 21:22
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## What's Changed

New Contributors

Full Changelog: v1.7.8...v1.7.9

v1.7.8

12 Jul 22:21
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What's Changed

=====
1.7.8

Additional Changes

  • #2100 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2100>_ - Setup.py does not conform to newest pip in python requires
  • #2101 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2101>_ - Deprecate 3.6 references from idmtools
  • #2102 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2102>_ - Doc fix

Bugs

  • #2083 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2083>_ - python11 issue with dataclasses

Full Changelog: v1.7.7...v1.7.8

v1.7.7

23 Jun 20:11
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=====
1.7.7

Bugs

  • #2084 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2084>_ - Potential issue with mismatch version of pandas and matplotlib

Dependencies

  • #2013 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2013>_ - Update yaspin requirement from <2.3.0,>=1.2.0 to >=1.2.0,<2.4.0
  • #2024 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2024>_ - Update coverage requirement from <6.6,>=5.3 to >=5.3,<7.3

Documentation

  • #2000 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2000>_ - slurm commission take too much memory which can exceeds head node's max memory
  • #2042 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2042>_ - Write doc: run main script as SLURM job

Feature Request

  • #1998 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1998>_ - Potential issue with max count of simulations in slurm platform
  • #2043 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2043>_ - Write Python utility to run main script as SLURM job
  • #2041 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2041>_ - Write workaround steps: run main script as SLURM job
  • #2095 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2095>_ - Add singularity bind experiment by default for slurm
  • #2096 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/2096>_ - Add few more COMPS server aliases

v1.7.6

31 Mar 17:22
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What's Changed

Summary
idmtools release 1.7.6

  • new package idmtools_platform_general which contains
    . FilePlatform
    . ProcessPlatform
  • ID Generator
  • Fixed deepcopy issue

Details

  • Implement SlurmPlatform Status utility by @ZDu-IDM in #2004
  • Support alternate id generators by @emilykclaps in #1825
  • Add example for ssmt with extra packages based on Clinton's example by @shchen-idmod in #2020
  • Add unittests for idmtools_platform_file and add/update github actions by @shchen-idmod in #2023
  • File platform: implemented workflow (folders and files are generated). by @ZDu-IDM in #2019
  • Fix test in File platform by @shchen-idmod in #2026
  • File platform: implemented experiment execution (batch and status, etc.) by @ZDu-IDM in #2025
  • Add file platform cli tests by @shchen-idmod in #2039
  • File platform: implementation of CLI utility by @ZDu-IDM in #2038
  • Add unittests and examples for file and process platforms by @shchen-idmod in #2045
  • Platform-General: implementation of ProcessPlatform by @ZDu-IDM in #2044

v1.7.5

31 Mar 17:20
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What's Changed

  • Hotfix SlutmPlatform memory space issue by @ZDu-IDM in #2006
  • Time for Simulation Creation Increases with Python Requirements #1395

v1.7.4

31 Mar 17:14
7315a72
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What's Changed

  • Hotfix Slurm commission performance issue by @ZDu-IDM in #1996
  • Performance issue: slurm commission is too slow #1829
  • Disable simulations in Experiment metadata for now #1977
  • Make batch_size and max_workers configurable with run method #2007
  • Add new slurm parameter: constraint #2008

v1.7.3

05 Jan 22:00
5d1c216
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=====
1.7.3

Additional Changes

  • #1835 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1835>_ - Do the release of 1.7.0.pre

  • #1837 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1837>_ - Release 1.7.0

  • #1855 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1855>_ - Generate Changelog for 1.7.0

  • #1857 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1857>_ - Test final singularity image

  • #1858 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1858>_ - Complete basic use of idmtools-slurm-bridge docs

  • #1863 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1863>_ - Presentation for Jaline

  • #1876 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1876>_ - Build new singularity image

    Bugs

  • #1623 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1623>_ - We should not generate debug log for _detect_command_line_from_simulation in simulation_operations.py

  • #1661 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1661>_ - Script seems to require pwd module but not included in requirements.txt

  • #1666 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1666>_ - logging.set_file_logging should pass level to create_file_handler()

  • #1756 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1756>_ - Suite Operation run_item doesn't pass kwargs to sub-calls

  • #1813 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1813>_ - Writing experiment parent id in experiment metadata records the wrong suite id

  • #1877 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1877>_ - Revert sphinx to 4 and pin in dependabot

  • #1907 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1907>_ - Make cache directory configurable

  • #1915 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1915>_ - run_simulation.sh should be copied over instead of link

    Core

  • #1826 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1826>_ - Update to require at east python 3.7

    Dependencies

  • #1906 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1906>_ - Update pygithub requirement from ~=1.55 to ~=1.56

  • #1910 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1910>_ - Update flask-sqlalchemy requirement from ~=2.5.1 to ~=3.0.2

  • #1911 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1911>_ - Update sqlalchemy requirement from ~=1.4.41 to ~=1.4.42

  • #1912 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1912>_ - Update gevent requirement from <21.13.0,>=20.12.1 to >=20.12.1,<22.11.0

  • #1914 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1914>_ - Update more-itertools requirement from ~=8.14.0 to ~=9.0.0

  • #1920 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1920>_ - Update psycopg2-binary requirement from ~=2.9.4 to ~=2.9.5

  • #1921 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1921>_ - Update pytest-html requirement from ~=3.1.1 to ~=3.2.0

  • #1922 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1922>_ - Update pycomps requirement from ~=2.8 to ~=2.9

  • #1923 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1923>_ - Update colorama requirement from ~=0.4.5 to ~=0.4.6

  • #1933 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1933>_ - Update pytest-xdist requirement from ~=2.5 to ~=3.0

  • #1934 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1934>_ - Update pytest requirement from ~=7.1.3 to ~=7.2.0

  • #1942 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1942>_ - Update sqlalchemy requirement from ~=1.4.42 to ~=1.4.43

  • #1943 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1943>_ - Update pygithub requirement from ~=1.56 to ~=1.57

    Developer/Test

  • #1649 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1649>_ - github action test failed which can not retrieve the latest ssmt image

  • #1652 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1652>_ - Changelog not showing after 1.6.2 release

    Documentation

  • #1378 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1378>_ - Container Python Package development guide

  • #1453 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1453>_ - emodpy example for the local platform

    Feature Request

  • #1359 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1359>_ - PlatformFactory should save extra args to an object to be able to be serialized later

    Platforms

  • #1853 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1853>_ - Add utils to platform-comps Utils

  • #1854 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1854>_ - Add utils to platform-slurm utils

  • #1864 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1864>_ - Document user installed packages in Singularity images

    User Experience

  • #1804 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1804>_ - Default root for run/job directories in slurm local platform is '.'

  • #1805 <https://github.com/InstituteforDiseaseModeling/idmtools/issues/1805>_ - Slurm local platform should make containing experiments/suites as needed

What's Changed

Full Changelog: v1.7.0...v1.7.3

v1.7.1

25 Oct 16:19
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Full Changelog: v1.6.7...v1.7.1

v1.7.0

25 Oct 16:18
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What's Changed

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