Skip to content
forked from amplab/snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

License

Apache-2.0, Unknown licenses found

Licenses found

Apache-2.0
LICENSE
Unknown
COPYING
Notifications You must be signed in to change notification settings

HibberdLab/snap

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

SNAP

Scalable Nucleotide Alignment Program - http://snap.cs.berkeley.edu

Overview

SNAP is a fast and accurate aligner for short DNA reads. It is optimized for modern read lengths of 100 bases or higher, and takes advantage of these reads to align data quickly through a hash-based indexing scheme.

Documentation

A quick start guide and user manual are available in the docs folder, with additional documentation at http://snap.cs.berkeley.edu.

Building

SNAP runs on Windows, Linux and Mac OS X.

For Windows, we provide a Visual C++ project, snap.sln. Requirements:

  • Visual Studio 2012 (11.0)

For Linux and OS X, simply type make. Requirements:

About

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Resources

License

Apache-2.0, Unknown licenses found

Licenses found

Apache-2.0
LICENSE
Unknown
COPYING

Stars

Watchers

Forks

Packages

No packages published

Languages

  • C++ 92.9%
  • C 6.8%
  • Other 0.3%